miR-Intess: classification

other hairpins

novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (15 loci)

block3632 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102641
	------------------------------------------------------------------------------------	NM_031035
	------------------------------------------------------------------------------------	NM_001106714
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:946977:947050:-1

Same_strand|Intronic_coding|NM_102641|AT1G29000 ## Opposite_strand|Intronic_non-coding|NM_031035|Gnai2 ## {Repeats: no}

block3804 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_017182
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	------------------------------------------------------------------------------------	NM_001016453
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	------------------------------------------------------------------------------------	NM_001041377
	------------------------------------------------------------------------------------	NM_001042144
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072974
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182305
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:10972401:10972474:-1

Same_strand|Intronic_non-coding|NM_017182|H2afy ## Opposite_strand|Intronic_non-coding|NM_001016453|spg4 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_coding|NM_001041377|ECU05_1680 ## {Repeats: no}

block3823 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001126434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028773
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074150
	------------------------------------------------------------------------------------	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003299
	------------------------------------------------------------------------------------	NM_212567
	------------------------------------------------------------------------------------	NM_001113262
	------------------------------------------------------------------------------------	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074226
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:11952883:11952956:-1

Opposite_strand|Intronic_non-coding|NM_001126434|LOC570148 ## Same_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Opposite_strand|Intronic_coding|NM_001113262|Fib-h ## Same_strand|Intronic_non-coding|NM_026039|Med18 ## {Repeats: no}

block3880 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028567
	------------------------------------------------------------------------------------	NM_001077602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067949
	------------------------------------------------------------------------------------	NM_063805
	------------------------------------------------------------------------------------	NM_001039440
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070063
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047702
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074706
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:13857792:13857865:-1

Same_strand|Intronic_coding|NM_001028567|srz-44 ## Opposite_strand|Intronic_coding|NM_001077602|cyp4v2 ## {Repeats: no}

block3946 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.097	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-7	3arm	20	nd	0.48	6	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggcaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028815
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170227
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114052
cbriggsae	((((.((.((((...(((.....((..((((.(((........)))))))..))...))).)))).)).)))).	0.980 -22.70

cbriggsae

chromosome:chrV:780120:780193:1

Same_strand|Intronic_coding|NM_001028815|F56H9.6 ## {Repeats: no}

block4586 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001004313
	------------------------------------------------------------------------------------	NM_008873
	------------------------------------------------------------------------------------	NM_001088391
	------------------------------------------------------------------------------------	NM_077714
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrX:14287365:14287438:-1

Opposite_strand|Intronic_non-coding|NM_001004313|TMEM220 ## Opposite_strand|Intronic_coding|NM_077714|nhr-17 ## {Repeats: no}

block4667 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101467
	------------------------------------------------------------------------------------	NM_205032
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040239
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063962
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrX:16975349:16975422:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_063962|let-858 ## {Repeats: no}

block4668 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtggttaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	------------------------------------------------------------------------------------	NM_205032
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063962
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -22.00

cbriggsae

chromosome:chrX:17005960:17006033:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_063962|let-858 ## {Repeats: no}

novel_lenNOK_shortStem_nonpairedHIGH (15 loci)

block131 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.849	no	no	0.37/0.37	19/19/0.00	0.0	0.0	2	0	1	0	3	25	5arm	1	nd	0.32	3	2	1	na	na

		reads	miRBase family seed
seed	----UUUUCGA-------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---GTTTTCGAATCCAAGTTGT--------------------------------------------------------------------------------------	19	2
cbriggsae	gttGTTTTCGAATCCAAGTTGTgatttcgaatcgggtgagaagttcgtagtcgcactattctctttttccttttctttatgcaccgtaggcttggcaaccgacgctgc
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115678
	----------------------------------------------------------------------------------------------------------------------	NM_080788
	----------------------------------------------------------------------------------------------------------------------	NM_001024857
	----------------------------------------------------------------------------------------------------------------------	NM_001024856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170227
	----------------------------------------------------------------------------------------------------------------------	NM_059798
cbriggsae	.......(((...((((((((((.....(((..(((.(((((((.((....)).)))..))))....)))..)))......)))....)))))))....)))......	0.720 -21.00

cbriggsae

chromosome:chrI:6620411:6620518:-1

Same_strand|Intronic_non-coding|NM_011380|Six2 ## Same_strand|Intronic_coding|NM_115678|XIJ ## Opposite_strand|Intronic_coding|NM_080788|Ttbk2 ## {Repeats: no}

block297 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.977	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	0	24	5arm	1	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-UCUCAUG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTCTCATGAGATAAGCAACAATTCC-------------------------------------------------------------------------	25	1
cbriggsae	GTCTCATGAGATAAGCAACAATTCCaaacattaaaatataggcaaattcaattagaatgtaaacgtaacttggtgtgagtccttcgtcatcttcggat
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026450
	------------------------------------------------------------------------------------------------------------	NM_001024290
	------------------------------------------------------------------------------------------------------------	NM_175692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001089360
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115574
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021399
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079883
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109628
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109626
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026279
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026278
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026277
cbriggsae	((((...(((((..((((..((((...(((((((..(((......((((.....))))......)))..)))))))))))..)).)).))))).))))	0.410 -10.30

cbriggsae

chromosome:chrI:3857904:3858001:1

Same_strand|Intronic_non-coding|NM_026450|Zfp169 ## Opposite_strand|Intronic_non-coding|NM_001024290|Gal3st3 ## Same_strand|Intronic_coding|NM_001087652|col18sv-a ## {Repeats: no}

Page 49

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Page 70

miR-Intess™

block3632 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3804 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3823 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3880 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3946 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block4586 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block4667 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block4668 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block131 [novel_lenNOK_shortStem_nonpairedHIGH]

block297 [novel_lenNOK_shortStem_nonpairedHIGH]