other hairpins
novel_lenNOK_shortStem_nonpairedHIGH (15 loci)
block639 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 0 | 35 | 5arm | 1 | nd | 0.33 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GAAAAAU--------------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| TGAAAAATATGTTGTTTG----------------------------------------------------------------------------------------- | 18 | 2 | |
| cbriggsae | TGAAAAATATGTTGTTTGctttctaaaagtttttgttcatcttgtgatttttaccacataaaaatcatgaacactgatttttcgcagcctgaatggctcatcattca | ||
| *********************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061909 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_074979 | ||
| --------------------------------------------------------------------------------------------------------------------- | NM_001047951 | ||
| ..........................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_074739 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070846 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061903 | ||
| cbriggsae | .(((..((..((..((((((....(((((((..((((((.....(((((((((.....)))))))))))))))..)))))))...)))..)))..))..))..))). | 0.740 -22.00 |
| cbriggsae | chromosome:chrII:4685506:4685612:-1 | Same_strand|Intronic_coding|NM_061909|sri-71 ## Opposite_strand|Intronic_coding|NM_001047951|LOC499796 ## {Repeats: no} |
block1112 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.72/0.72 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 22 | 5arm | 4 | nd | 0.40 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----GACCGAG------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---CGACCGAGCGTCCGTGCCAAGCGCT------------------------------------------------------------------------- | 25 | 1 | |
| cbriggsae | cggCGACCGAGCGTCCGTGCCAAGCGCTgcgtcgctaggggtctccggtcggaaggctggcggtcccgggcgcataaggagtggtgcacggctcagggccg | ||
| ***************************************************************************************************** | |||
| cbriggsae | ((((..((((((...(((((...((.((..((((((.((((((.((((((....)))))).)))))).)))).))..)).))...))))))))).)))))) | 0.980 -49.90 |
| cbriggsae | chromosome:chrII_random:14532:14632:-1 | {Repeats: no} |
block1202 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.067 | no | no | 0.72/0.72 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 22 | 5arm | 4 | nd | 0.40 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----GACCGAG------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---CGACCGAGCGTCCGTGCCAAGCGCT------------------------------------------------------------------------- | 25 | 1 | |
| cbriggsae | cggCGACCGAGCGTCCGTGCCAAGCGCTgcgtcgccaggggtctccggtcggaaggctggcggtcccgggcgcataaggagtggtgcacggctcagggccg | ||
| ***************************************************************************************************** | |||
| cbriggsae | ((((..((((((...(((((...((.((..((((((.((((((.((((((....)))))).)))))).)))).))..)).))...))))))))).)))))) | 0.990 -51.80 |
| cbriggsae | chromosome:chrII_random:181228:181328:1 | {Repeats: no} |
block1789 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.710 | no | no | 0.56/0.56 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 14 | 3arm | 1 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------UGGACAC----------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------GTGGACACGTAGTCTAGTGGCTTGC | 25 | 1 | |
| cbriggsae | cgaccacccaccactctccatttttcacacgttcttatccggctttcacctcatatccgtatGTGGACACGTAGTCTAGTGGCTTGC | ||
| *************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------- | NM_000209 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_170975 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001027762 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007723 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011571 | ||
| ------------------------------------------------------------------------------------------------- | NM_075282 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075505 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_010466 | ||
| ------------------------------------------------------------------------------------------------- | NM_133381 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_065139 | ||
| ------------------------------------------------------------------------------------------------- | NM_075413 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001050895 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001013315 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001105043 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001067238 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001067238 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001067238 | ||
| cbriggsae | (((((((..((.((..((((.....((.(((....(((..((......))..)))..))).))))))...)).))...)))).))). | 0.420 -11.00 |
| cbriggsae | chromosome:chrIII:10373999:10374085:1 | Opposite_strand|Intronic_non-coding|NM_000209|PDX1 ## Same_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Same_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no} |
block1991 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.240 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 1 | 11 | 3arm | 1 | nd | 0.32 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------UACAUGA------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------TTACATGACAACTATCGAG- | 19 | 2 | |
| cbriggsae | tttcgtctgtttcatgggtttgatgtttagaataactttatgttgtaatcgcTTACATGACAACTATCGAGa | ||
| ************************************************************************ | |||
| cbriggsae | (((((...((((((((....((((.......(((((.....))))).))))....))))).)))...))))) | 0.960 -12.80 |
| cbriggsae | chromosome:chrIV:2298411:2298482:-1 | {Repeats: no} |
block2001 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.35/0.37 | 19/20/0.50 | 0.5 | 0.0 | 2 | 0 | 1 | 0 | 4 | 22 | 5arm | 1 | nd | 0.35 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------CAUUGUC--------------------------------------------------------------------------------------- | 1 | novel |
| seed | -----UCAUUGU---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----TTCATTGTCCTAGGTATTTG---------------------------------------------------------------------------- | 20 | 1 | |
| -----TCATTGTCCTAGGTATTTG---------------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | attaTTCATTGTCCTAGGTATTTGattggtccgatctctttttttaattttcctaaaaaaagtgttctgtttcccacagttggtaataggatttgagtga | ||
| **************************************************************************************************** | |||
| cbriggsae | .(((((((..((((((..((((....(((...((...(((((((((.......)))))))))...))......))).....)))).)))))).))))))) | 0.540 -20.10 |
| cbriggsae | chromosome:chrIV:2418944:2419043:-1 | {Repeats: no} |
block2475 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.030 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 3 | 3arm | 1 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------CCAGUGC------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------TCCAGTGCGTATGCGATGT- | 19 | 1 | |
| cbriggsae | tattttgttcgcattcaaacaaaaatgtTCCAGTGCGTATGCGATGTa | ||
| ************************************************ | |||
| ---------------------------------------------------------- | NM_020714 | ||
| ---------------------------------------------------------- | NM_060105 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047451 | ||
| cbriggsae | (((.((((.((((((..((((....))))..))))))...)))).))) | 1.000 -11.20 |
| cbriggsae | chromosome:chrIV:2695031:2695078:1 | Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## Same_strand|Intronic_coding|NM_001047451|C27H2.2 ## {Repeats: no} |
block3458 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.564 | no | no | 0.50/0.50 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 24 | 5arm | 4 | nd | 0.31 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --UCUCGAA----------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -GTCTCGAACATTGCCCACGATAGAAG----------------------------------------------------------------------------------------- | 26 | 1 | |
| cbriggsae | cGTCTCGAACATTGCCCACGATAGAAGaaatgggctgccgacgcttctttaactgcctgaggaacagctccgttgtcagcctcgtttttgttttaaagtttcaaacgatcggtgat | ||
| ******************************************************************************************************************** | |||
| cbriggsae | .(((((((...(((...((..((((((((((((((((.(((((((((((((......))))))..)))...)))).))))).))))))..)))))..))..)))....)))).))) | 0.460 -27.40 |
| cbriggsae | chromosome:chrUn:3803404:3803519:1 | {Repeats: no} |
block3591 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.756 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 32 | 5arm | 1 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -AUUAAUA------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| TATTAATACTAGGCAGTCC-------------------------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | TATTAATACTAGGCAGTCCaagtcaccattaaaaatagtacttttatgaaaaatctttcgaggttcagtttttttttttttttaaatcactgtttcccaattgat | ||
| ********************************************************************************************************* | |||
| ------------------------------------------------------------------------------------------------------------------- | NM_202770 | ||
| ------------------------------------------------------------------------------------------------------------------- | NM_069018 | ||
| cbriggsae | .((((((...(((((((.............((((((...(((((...((((....)))))))))...))))))...............)))))))....)))))) | 0.490 -9.59 |
| cbriggsae | chromosome:chrUn:6451549:6451653:1 | Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no} |
block3607 [novel_lenNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.46/0.46 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 25 | 5arm | 1 | nd | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UCAAUUG------------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----GTCAATTGAGCTATTGAAGACGGTGG------------------------------------------------------------------------------------------ | 26 | 1 | |
| cbriggsae | tgacGTCAATTGAGCTATTGAAGACGGTGGagcagctcggaatcgttaaaattggttttgcttcttcttcagaacgaacatttggaagttctccagcgattcgattcctaaatctttgtc | ||
| ************************************************************************************************************************ | |||
| cbriggsae | .((((...(((.((..((((((..((.(((((.(((((.((((((((......((........)).......)))))...))).)).)))))))).)).))))))..)).)))...)))) | 0.470 -27.72 |
| cbriggsae | chromosome:chrUn:6895449:6895568:1 | {Repeats: no} |
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