other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH (7 loci)
sblock51 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.36/0.64 | 18/28/0.40 | 0.0 0.8 0.3 | 0.0 0.2 0.0 | 1 8 24 | 0 0 0 | 1 1 1 | 0 0 0 | 3 15 2 | 5 -13 9 | 5arm 5arm_loop_3arm 3arm | 7 7 7 | nd nd nd | 0.35 0.36 0.45 | 3 4 6 | 48 | 1 | 4 | 3 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UCCUGGA------------- | 20 | novel |
| seed | ------------------------------------------AUCCUGG-------------- | 10 | novel |
| seed | -----------------UACUUGG--------------------------------------- | 4 | novel |
| seed | ----------------------------------GCCUGGG---------------------- | 3 | novel |
| seed | -------------------CUUGGAU------------------------------------- | 2 | novel |
| seed | ----------------GUACUUG---------------------------------------- | 2 | novel |
| seed | ------------------ACUUGGA-------------------------------------- | 2 | novel |
| seed | -----------------------------------------AAUCCUG--------------- | 1 | novel |
| seed | ----------------------------------------GAAUCCU---------------- | 1 | novel |
| seed | -------------------------------------UGGGAAU------------------- | 1 | novel |
| seed | ----UGAGUCC---------------------------------------------------- | 1 | novel |
| seed | ------------------------------------CUGGGAA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------ATCCTGGATGTTGTAAGCT-- | 19 | 17 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCT-- | 20 | 7 | |
| ----------------GTACTTGGATCGGAGACGGCCTGGG---------------------- | 25 | 4 | |
| ---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT-- | 28 | 3 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTT- | 20 | 2 | |
| ------------------ACTTGGATCGGAGACGGCCTGG----------------------- | 22 | 2 | |
| ---------------AGTACTTGGATCGGAGACGGCCTGGG---------------------- | 26 | 2 | |
| -----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT-- | 26 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAG---- | 18 | 1 | |
| ----------------------------------------GAATCCTGGATGTTGTAAGCT-- | 21 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTT- | 21 | 1 | |
| ---TTGAGTCCAGTTAGTACTTG---------------------------------------- | 20 | 1 | |
| ---------------------------------------GGAATCCTGGATGTTGTAAGCT-- | 22 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTGG----------------------- | 23 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTTT | 22 | 1 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTTT | 21 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTG------------------------ | 22 | 1 | |
| ------------------------------------CTGGGAATCCTGGATGTTGTAAGCT-- | 25 | 1 | |
| cbriggsae | acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt | ||
| *************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................... | NM_170601 | ||
| cbriggsae | (((....((((((...((.(((((..((....))..))))).)).))))))..)))....... | 0.990 -17.60 |
| cbriggsae | chromosome:chrUn:4857886:4857948:-1 | Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## Opposite_strand|Exonic_non-coding|NM_170601|SIAE ## {Repeats: no} |
sblock53 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.36/0.64 | 18/28/0.40 | 0.0 0.8 0.3 | 0.0 0.2 0.0 | 1 8 24 | 0 0 0 | 1 1 1 | 0 0 0 | 3 15 2 | 5 -13 9 | 5arm 5arm_loop_3arm 3arm | 7 7 7 | nd nd nd | 0.35 0.36 0.45 | 3 4 6 | 48 | 1 | 4 | 3 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UCCUGGA------------- | 20 | novel |
| seed | ------------------------------------------AUCCUGG-------------- | 10 | novel |
| seed | -----------------UACUUGG--------------------------------------- | 4 | novel |
| seed | ----------------------------------GCCUGGG---------------------- | 3 | novel |
| seed | -------------------CUUGGAU------------------------------------- | 2 | novel |
| seed | ----------------GUACUUG---------------------------------------- | 2 | novel |
| seed | ------------------ACUUGGA-------------------------------------- | 2 | novel |
| seed | -----------------------------------------AAUCCUG--------------- | 1 | novel |
| seed | ----------------------------------------GAAUCCU---------------- | 1 | novel |
| seed | -------------------------------------UGGGAAU------------------- | 1 | novel |
| seed | ----UGAGUCC---------------------------------------------------- | 1 | novel |
| seed | ------------------------------------CUGGGAA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------ATCCTGGATGTTGTAAGCT-- | 19 | 17 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCT-- | 20 | 7 | |
| ----------------GTACTTGGATCGGAGACGGCCTGGG---------------------- | 25 | 4 | |
| ---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT-- | 28 | 3 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTT- | 20 | 2 | |
| ------------------ACTTGGATCGGAGACGGCCTGG----------------------- | 22 | 2 | |
| ---------------AGTACTTGGATCGGAGACGGCCTGGG---------------------- | 26 | 2 | |
| -----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT-- | 26 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAG---- | 18 | 1 | |
| ----------------------------------------GAATCCTGGATGTTGTAAGCT-- | 21 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTT- | 21 | 1 | |
| ---TTGAGTCCAGTTAGTACTTG---------------------------------------- | 20 | 1 | |
| ---------------------------------------GGAATCCTGGATGTTGTAAGCT-- | 22 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTGG----------------------- | 23 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTTT | 22 | 1 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTTT | 21 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTG------------------------ | 22 | 1 | |
| ------------------------------------CTGGGAATCCTGGATGTTGTAAGCT-- | 25 | 1 | |
| cbriggsae | acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt | ||
| *************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................... | NM_170601 | ||
| cbriggsae | (((....((((((...((.(((((..((....))..))))).)).))))))..)))....... | 0.990 -17.60 |
| cbriggsae | chromosome:chrUn:5166254:5166316:-1 | Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## Opposite_strand|Exonic_non-coding|NM_170601|SIAE ## {Repeats: no} |
sblock30 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.36/0.64 | 18/28/0.40 | 0.0 0.8 0.3 | 0.0 0.2 0.0 | 1 8 24 | 0 0 0 | 1 1 1 | 0 0 0 | 3 15 2 | 5 -13 9 | 5arm 5arm_loop_3arm 3arm | 7 7 7 | nd nd nd | 0.35 0.36 0.45 | 3 4 6 | 48 | 1 | 4 | 3 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UCCUGGA------------- | 20 | novel |
| seed | ------------------------------------------AUCCUGG-------------- | 10 | novel |
| seed | -----------------UACUUGG--------------------------------------- | 4 | novel |
| seed | ----------------------------------GCCUGGG---------------------- | 3 | novel |
| seed | -------------------CUUGGAU------------------------------------- | 2 | novel |
| seed | ----------------GUACUUG---------------------------------------- | 2 | novel |
| seed | ------------------ACUUGGA-------------------------------------- | 2 | novel |
| seed | -----------------------------------------AAUCCUG--------------- | 1 | novel |
| seed | ----------------------------------------GAAUCCU---------------- | 1 | novel |
| seed | -------------------------------------UGGGAAU------------------- | 1 | novel |
| seed | ----UGAGUCC---------------------------------------------------- | 1 | novel |
| seed | ------------------------------------CUGGGAA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------ATCCTGGATGTTGTAAGCT-- | 19 | 17 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCT-- | 20 | 7 | |
| ----------------GTACTTGGATCGGAGACGGCCTGGG---------------------- | 25 | 4 | |
| ---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT-- | 28 | 3 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTT- | 20 | 2 | |
| ------------------ACTTGGATCGGAGACGGCCTGG----------------------- | 22 | 2 | |
| ---------------AGTACTTGGATCGGAGACGGCCTGGG---------------------- | 26 | 2 | |
| -----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT-- | 26 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAG---- | 18 | 1 | |
| ----------------------------------------GAATCCTGGATGTTGTAAGCT-- | 21 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTT- | 21 | 1 | |
| ---TTGAGTCCAGTTAGTACTTG---------------------------------------- | 20 | 1 | |
| ---------------------------------------GGAATCCTGGATGTTGTAAGCT-- | 22 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTGG----------------------- | 23 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTTT | 22 | 1 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTTT | 21 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTG------------------------ | 22 | 1 | |
| ------------------------------------CTGGGAATCCTGGATGTTGTAAGCT-- | 25 | 1 | |
| cbriggsae | acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt | ||
| *************************************************************** | |||
| ------------------------------------------------------------------------- | NM_001092591 | ||
| ------------------------------------------------------------------------- | NM_177186 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001030661 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001027534 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001027535 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_066897 | ||
| cbriggsae | (((....((((((...((.(((((..((....))..))))).)).))))))..)))....... | 0.990 -17.60 |
| cbriggsae | chromosome:chrIII:8638773:8638835:-1 | Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## {Repeats: no} |
sblock50 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.36/0.64 | 18/28/0.40 | 0.0 0.8 0.3 | 0.0 0.2 0.0 | 1 8 24 | 0 0 0 | 1 1 1 | 0 0 0 | 3 15 2 | 5 -13 9 | 5arm 5arm_loop_3arm 3arm | 7 7 7 | nd nd nd | 0.35 0.36 0.45 | 3 4 6 | 48 | 1 | 4 | 3 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UCCUGGA------------- | 20 | novel |
| seed | ------------------------------------------AUCCUGG-------------- | 10 | novel |
| seed | -----------------UACUUGG--------------------------------------- | 4 | novel |
| seed | ----------------------------------GCCUGGG---------------------- | 3 | novel |
| seed | -------------------CUUGGAU------------------------------------- | 2 | novel |
| seed | ----------------GUACUUG---------------------------------------- | 2 | novel |
| seed | ------------------ACUUGGA-------------------------------------- | 2 | novel |
| seed | -----------------------------------------AAUCCUG--------------- | 1 | novel |
| seed | ----------------------------------------GAAUCCU---------------- | 1 | novel |
| seed | -------------------------------------UGGGAAU------------------- | 1 | novel |
| seed | ----UGAGUCC---------------------------------------------------- | 1 | novel |
| seed | ------------------------------------CUGGGAA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------ATCCTGGATGTTGTAAGCT-- | 19 | 17 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCT-- | 20 | 7 | |
| ----------------GTACTTGGATCGGAGACGGCCTGGG---------------------- | 25 | 4 | |
| ---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT-- | 28 | 3 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTT- | 20 | 2 | |
| ------------------ACTTGGATCGGAGACGGCCTGG----------------------- | 22 | 2 | |
| ---------------AGTACTTGGATCGGAGACGGCCTGGG---------------------- | 26 | 2 | |
| -----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT-- | 26 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAG---- | 18 | 1 | |
| ----------------------------------------GAATCCTGGATGTTGTAAGCT-- | 21 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTT- | 21 | 1 | |
| ---TTGAGTCCAGTTAGTACTTG---------------------------------------- | 20 | 1 | |
| ---------------------------------------GGAATCCTGGATGTTGTAAGCT-- | 22 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTGG----------------------- | 23 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTTT | 22 | 1 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTTT | 21 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTG------------------------ | 22 | 1 | |
| ------------------------------------CTGGGAATCCTGGATGTTGTAAGCT-- | 25 | 1 | |
| cbriggsae | acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt | ||
| *************************************************************** | |||
| cbriggsae | (((....((((((...((.(((((..((....))..))))).)).))))))..)))....... | 0.990 -17.60 |
| cbriggsae | chromosome:chrUn:4856949:4857011:-1 | {Repeats: no} |
sblock52 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.36/0.64 | 18/28/0.40 | 0.0 0.8 0.3 | 0.0 0.2 0.0 | 1 8 24 | 0 0 0 | 1 1 1 | 0 0 0 | 3 15 2 | 5 -13 9 | 5arm 5arm_loop_3arm 3arm | 7 7 7 | nd nd nd | 0.35 0.36 0.45 | 3 4 6 | 48 | 1 | 4 | 3 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UCCUGGA------------- | 20 | novel |
| seed | ------------------------------------------AUCCUGG-------------- | 10 | novel |
| seed | -----------------UACUUGG--------------------------------------- | 4 | novel |
| seed | ----------------------------------GCCUGGG---------------------- | 3 | novel |
| seed | -------------------CUUGGAU------------------------------------- | 2 | novel |
| seed | ----------------GUACUUG---------------------------------------- | 2 | novel |
| seed | ------------------ACUUGGA-------------------------------------- | 2 | novel |
| seed | -----------------------------------------AAUCCUG--------------- | 1 | novel |
| seed | ----------------------------------------GAAUCCU---------------- | 1 | novel |
| seed | -------------------------------------UGGGAAU------------------- | 1 | novel |
| seed | ----UGAGUCC---------------------------------------------------- | 1 | novel |
| seed | ------------------------------------CUGGGAA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------ATCCTGGATGTTGTAAGCT-- | 19 | 17 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCT-- | 20 | 7 | |
| ----------------GTACTTGGATCGGAGACGGCCTGGG---------------------- | 25 | 4 | |
| ---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT-- | 28 | 3 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTT- | 20 | 2 | |
| ------------------ACTTGGATCGGAGACGGCCTGG----------------------- | 22 | 2 | |
| ---------------AGTACTTGGATCGGAGACGGCCTGGG---------------------- | 26 | 2 | |
| -----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT-- | 26 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAG---- | 18 | 1 | |
| ----------------------------------------GAATCCTGGATGTTGTAAGCT-- | 21 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTT- | 21 | 1 | |
| ---TTGAGTCCAGTTAGTACTTG---------------------------------------- | 20 | 1 | |
| ---------------------------------------GGAATCCTGGATGTTGTAAGCT-- | 22 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTGG----------------------- | 23 | 1 | |
| -----------------------------------------AATCCTGGATGTTGTAAGCTTT | 22 | 1 | |
| ------------------------------------------ATCCTGGATGTTGTAAGCTTT | 21 | 1 | |
| -----------------TACTTGGATCGGAGACGGCCTG------------------------ | 22 | 1 | |
| ------------------------------------CTGGGAATCCTGGATGTTGTAAGCT-- | 25 | 1 | |
| cbriggsae | acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt | ||
| *************************************************************** | |||
| cbriggsae | (((....((((((...((.(((((..((....))..))))).)).))))))..)))....... | 0.990 -17.60 |
| cbriggsae | chromosome:chrUn:5165558:5165620:-1 | {Repeats: no} |
novel_Multihit_loopOverlap_nonpairedHIGH (6 loci)
block37 [novel_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.471 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | -3 | 3arm_loop | 47 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------UAAUGGU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------GTAATGGTCAGCATGGATGCC------------------- | 21 | 1 | |
| cbriggsae | tctttagaatcttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggg | ||
| ******************************************************************************** | |||
| ------------------------------------------------------------------------------------------ | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_199320 | ||
| ------------------------------------------------------------------------------------------ | NM_014333 | ||
| ------------------------------------------------------------------------------------------ | NM_170676 | ||
| ------------------------------------------------------------------------------------------ | NM_170675 | ||
| ------------------------------------------------------------------------------------------ | NM_170674 | ||
| ------------------------------------------------------------------------------------------ | NM_001098517 | ||
| ------------------------------------------------------------------------------------------ | NM_170677 | ||
| ------------------------------------------------------------------------------------------ | NM_061553 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067080 | ||
| ------------------------------------------------------------------------------------------ | NM_058292 | ||
| cbriggsae | (((...(((((((...((((..((.((((((..((((......))))...))))))))..)))).))).))))...))). | 0.530 -18.80 |
| cbriggsae | chromosome:chrI:1287335:1287414:-1 | Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_199320|PHF17 ## Opposite_strand|Intronic_coding|NM_061553|C13A10.1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no} |
block40 [novel_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.471 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | -3 | 3arm_loop | 47 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------UAAUGGU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------GTAATGGTCAGCATGGATGCC------------------- | 21 | 1 | |
| cbriggsae | tctttagaatcttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggg | ||
| ******************************************************************************** | |||
| ------------------------------------------------------------------------------------------ | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_199320 | ||
| ------------------------------------------------------------------------------------------ | NM_014333 | ||
| ------------------------------------------------------------------------------------------ | NM_001098517 | ||
| ------------------------------------------------------------------------------------------ | NM_061553 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067080 | ||
| ------------------------------------------------------------------------------------------ | NM_001077534 | ||
| ------------------------------------------------------------------------------------------ | NM_020120 | ||
| ------------------------------------------------------------------------------------------ | NM_198899 | ||
| ------------------------------------------------------------------------------------------ | NM_133596 | ||
| ------------------------------------------------------------------------------------------ | NM_060083 | ||
| ------------------------------------------------------------------------------------------ | NM_001025777 | ||
| cbriggsae | (((...(((((((...((((..((.((((((..((((......))))...))))))))..)))).))).))))...))). | 0.530 -18.80 |
| cbriggsae | chromosome:chrI:1356615:1356694:-1 | Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_199320|PHF17 ## Opposite_strand|Intronic_coding|NM_061553|C13A10.1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no} |
block42 [novel_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.191 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | -3 | 3arm_loop | 47 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------UAAUGGU------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------GTAATGGTCAGCATGGATGCC------------ | 21 | 1 | |
| cbriggsae | gaatcttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattc | ||
| ******************************************************************* | |||
| ----------------------------------------------------------------------------- | NM_001011629 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_199320 | ||
| ----------------------------------------------------------------------------- | NM_014333 | ||
| ----------------------------------------------------------------------------- | NM_001098517 | ||
| ----------------------------------------------------------------------------- | NM_061553 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067080 | ||
| ----------------------------------------------------------------------------- | NM_001077534 | ||
| ----------------------------------------------------------------------------- | NM_020120 | ||
| ----------------------------------------------------------------------------- | NM_198899 | ||
| ----------------------------------------------------------------------------- | NM_133596 | ||
| ----------------------------------------------------------------------------- | NM_060083 | ||
| ----------------------------------------------------------------------------- | NM_001025777 | ||
| cbriggsae | (((((((...((((..((.((((((..((((......))))...))))))))..)))).))).)))) | 0.640 -16.50 |
| cbriggsae | chromosome:chrI:1360165:1360231:-1 | Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_199320|PHF17 ## Opposite_strand|Intronic_coding|NM_061553|C13A10.1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no} |
block53 [novel_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.250 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | -3 | 3arm_loop | 47 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------UAAUGGU-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------GTAATGGTCAGCATGGATGCC------------------------- | 21 | 1 | |
| cbriggsae | acgtcttcttattgtctttagaatgttctagaagaagttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggggttcga | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_057259 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008855 | ||
| -------------------------------------------------------------------------------------------------------------- | NM_061553 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_068079 | ||
| cbriggsae | .((.(((((....(((....(((((((...((((....(((((((..((((......))))...)))))))...))))..)))))))))))))))..)). | 0.780 -26.40 |
| cbriggsae | chromosome:chrI:1630218:1630317:-1 | Same_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Opposite_strand|Intronic_non-coding|NM_061553|C13A10.1 ## {Repeats: no} |
block257 [novel_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.167 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | -3 | 3arm_loop | 47 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------UAAUGGU-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------GTAATGGTCAGCATGGATGCC------------------------- | 21 | 1 | |
| cbriggsae | tcgtattgtctttggaatgttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggggttcga | ||
| ********************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| -------------------------------------------------------------------------------------------------------- | NM_199320 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_014333 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001098517 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061553 | ||
| -------------------------------------------------------------------------------------------------------- | NM_067080 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001077534 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020120 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_198899 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_133596 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_060083 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001025777 | ||
| cbriggsae | (((.(((.((.((.(((((((...((((..((.((((((..((((......))))...))))))))..))))..))))))))).)).))).))) | 0.700 -25.30 |
| cbriggsae | chromosome:chrI:1360363:1360456:1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## Same_strand|Intronic_coding|NM_061553|C13A10.1 ## Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no} |
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