miR-Intess: classification

other hairpins

block2448 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.497	no	no	0.40/0.40	20/20/1.00	0.0	0.0	2	0	1	0	3	25	3arm	1	nd	0.25	4	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------------UCCUCUC---------------	2	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------------TTCCTCTCTGATCGTTATGT---	20	2
cbriggsae	atacaggtggtagattaaaaatagggtgaacctgaaaatcacagtttcattgacatcataaaatgaaggttttgaaaggattcttagTTCCTCTCTGATCGTTATGTatc
	**************************************************************************************************************
cbriggsae	(((((.......(((((.....((((.(((.((((.((((....(((((..(((.((((...))))..))).))))).)))).))))))))))).)))))....))))).	0.790 -19.30

cbriggsae

chromosome:chrIV:2360970:2361079:1

{Repeats: no}

block2505 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.460	no	no	0.50/0.50	22/22/1.00	0.0	0.0	2	0	1	0	4	28	5arm	1	nd	0.27	4	2	1	na	na

		reads	miRBase family seed
seed	-----ACCUUGA------------------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----GACCTTGATCCTGGTTAGATCG----------------------------------------------------------------------------------------------	22	2
cbriggsae	cgagGACCTTGATCCTGGTTAGATCGgctttgaggaccgccggcgacaaaaccgtccacttttcggtttgtggcgtggatctcgtgtccggctctttggtggctaccatggtttttctcg
	************************************************************************************************************************
cbriggsae	((((((....((((.((((.(((((((...(((((.((((..((.((.((((((.........)))))))).)))))).)))))...)))).))).........)))).)))).))))))	0.590 -38.60

cbriggsae

chromosome:chrIV:2998379:2998498:1

{Repeats: no}

block4111 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	1	4	3arm	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------AUCCAGA-------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------GATCCAGATTCAAACCAGGT-	20	1
cbriggsae	tgccggtttgattttcatcatctcagctttctcctcttctcttgtcttctcatccagttGATCCAGATTCAAACCAGGTa
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075092
	------------------------------------------------------------------------------------------	NM_001011629
	------------------------------------------------------------------------------------------	NM_072913
	------------------------------------------------------------------------------------------	NM_072367
	------------------------------------------------------------------------------------------	NM_072366
	------------------------------------------------------------------------------------------	NM_001087279
	------------------------------------------------------------------------------------------	NM_141224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001035427
	----------------<<<<<<<<<<<<<-------------------------------------------------------------	NM_072435
cbriggsae	(((((((((((...((......((((((...........................))))))....)).))))))).))))	0.970 -14.43

cbriggsae

chromosome:chrV:10330040:10330119:1

Same_strand|Intronic_coding|NM_075092|srx-18 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_072913|nhr-219 ## Same_strand|Intronic_non-coding|NM_001035427|SERINC1 ## {Repeats: no}

novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)

block4688 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.310	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	30	-4	5arm_loop	22	nd	0.38	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------UUGUUGU----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------CTTGTTGTCAGCTGGGACCTT---------------------------------------------------------------	21	1
cbriggsae	ttcgaactgttggccatcaccttggagaatCTTGTTGTCAGCTGGGACCTTctttgcatatcgttctccgctcacaaacgtgaagtcttcctggttctgagtttttgcttcgaa
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029869
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133906
	----------------------------------------------------------------------------------------------------------------------------	NM_068376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027016
	----------------------------------------------------------------------------------------------------------------------------	NM_079863
	----------------------------------------------------------------------------------------------------------------------------	NM_170535
	----------------------------------------------------------------------------------------------------------------------------	NM_170536
	----------------------------------------------------------------------------------------------------------------------------	NM_078585
	----------------------------------------------------------------------------------------------------------------------------	NM_167331
	----------------------------------------------------------------------------------------------------------------------------	NM_167332
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003262
	--------------------------------------------------------------------------------------------------------------<<<<<<<<<<<<<<	NM_078127
	------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_078127
	------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_078127
cbriggsae	.(((((.((..(((((..(((..(((((.((.((((((.(((.((((.................)))).))).)))).)).))..)))))..)))..)).)))..)).))))).	0.870 -25.93

cbriggsae

chromosome:chrX:17977333:17977446:-1

Same_strand|Intronic_non-coding|NM_029869|Zkscan1 ## Opposite_strand|Intronic_coding|NM_068376|ZK354.3 ## Same_strand|Intronic_coding|NM_027016|Sec62 ## Opposite_strand|Intronic_non-coding|NM_079863|dco ## {SimpF: trf}

block95 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	26	-4	5arm_loop	47	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UAAUGGU-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTAATGGTCAGCATGGATGCC------------------------------------------------------	21	1
cbriggsae	tgtctctgtttcgccgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcacacaggccaggcgcgactgctggataacgggcgaacgccggggcg
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	---------------------------------------------------------------------------------------------------------------	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
	---------------------------------------------------------------------------------------------------------------	NM_001853
	---------------------------------------------------------------------------------------------------------------	NM_057771
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026315
cbriggsae	.(((((.((((((((.((((.((.((((..(((((.((.((((.....)))).)).....))))).)))).))........)))))))))).)).))))).	0.700 -36.90

cbriggsae

chromosome:chrI:3743779:3743879:-1

Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_175692|A930034L06Rik ## Opposite_strand|Intronic_coding|NM_001087652|col18sv-a ## Same_strand|Intronic_coding|NM_001031386|CIR ## {Repeats: no}

block97 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	26	-4	5arm_loop	47	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UAAUGGU-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTAATGGTCAGCATGGATGCC------------------------------------------------------	21	1
cbriggsae	tgtctctgtttcgccgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcacacaggccaggcgcgactgctggataacgggcgaacgccggggcg
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	---------------------------------------------------------------------------------------------------------------	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
	---------------------------------------------------------------------------------------------------------------	NM_001853
	---------------------------------------------------------------------------------------------------------------	NM_057771
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026315
cbriggsae	.(((((.((((((((.((((.((.((((..(((((.((.((((.....)))).)).....))))).)))).))........)))))))))).)).))))).	0.700 -36.90

cbriggsae

chromosome:chrI:3748060:3748160:-1

novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (3 loci)

block176 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.191	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	0	-8	3arm	20	nd	0.37	3	14	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CCUUAGG----------------------------	7	novel
seed	---------------------------------------------------CGAAUCC------------	3	novel
seed	------------------------------------------------GUUCGAA---------------	1	novel
seed	-------------------------------------------CGCUGGU--------------------	1	novel
seed	--------------------------------------UAGGUCG-------------------------	1	novel
seed	---------------------------------------AGGUCGC------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	--------------------------------------------------TCGAATCCGGCTCGACGGAA	20	3
	----------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	-------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
	-----------------------------------------------GGTTCGAATCCGGCTCGACGGAA	23	1
	------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
	--------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
cbriggsae	ttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAA
	**********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032899
	--------------------------------------------------------------------------------	NM_199320
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005073
cbriggsae	((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)).	0.990 -20.60

cbriggsae

chromosome:chrI:8861987:8862056:-1

Same_strand|Intronic_non-coding|NM_001032899|SLC15A1 ## Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## {Repeats: no}

block3744 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.404	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	0	-1	3arm	20	nd	0.35	3	14	1	na	na

		reads	miRBase family seed
seed	------------------------------------CCUUAGG----------------------------	7	novel
seed	----------------------------------------------------CGAAUCC------------	3	novel
seed	---------------------------------------UAGGUCG-------------------------	1	novel
seed	----------------------------------------AGGUCGC------------------------	1	novel
seed	--------------------------------------------CGCUGGU--------------------	1	novel
seed	-------------------------------------------------GUUCGAA---------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	---------------------------------------------------TCGAATCCGGCTCGACGGAA	20	3
	-----------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	---------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
	--------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
	------------------------------------------------GGTTCGAATCCGGCTCGACGGAA	23	1
	-------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
cbriggsae	ttggtagagcggaggactgtagcagtcagtggttaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAA
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073462
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070729
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007823
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133969
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114375
	---------------------------------------------------------------------------------	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001112929
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001112929
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079237
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079859
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039441
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057559
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001017348
	---------------------------------------------------------------------------------	NM_078262
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177732
	---------------------------------------------------------------------------------	NM_001085355
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073446
	---------------------------------------------------------------------------------	NM_001024358
cbriggsae	((.((.((((((((((((..(((..((...((....))...))..))))))))...)))).))).)).)).	0.910 -20.40

cbriggsae

chromosome:chrV:7237240:7237310:-1

Same_strand|Intronic_coding|NM_073462|clec-223 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_non-coding|NM_001112929|LOC100127559 ## Opposite_strand|Intronic_non-coding|NM_078262|let-2 ## {Repeats: no}

block4329 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.136	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	0	-8	3arm	20	nd	0.37	3	14	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CCUUAGG----------------------------	7	novel
seed	---------------------------------------------------CGAAUCC------------	3	novel
seed	------------------------------------------------GUUCGAA---------------	1	novel
seed	-------------------------------------------CGCUGGU--------------------	1	novel
seed	--------------------------------------UAGGUCG-------------------------	1	novel
seed	---------------------------------------AGGUCGC------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	--------------------------------------------------TCGAATCCGGCTCGACGGAA	20	3
	----------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	-------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
	-----------------------------------------------GGTTCGAATCCGGCTCGACGGAA	23	1
	------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
	--------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
cbriggsae	ttggtagagcggaggactgtagagtcagtggttaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAA
	**********************************************************************
	--------------------------------------------------------------------------------	NM_001095669
	--------------------------------------------------------------------------------	NM_001047906
	--------------------------------------------------------------------------------	NM_001047906
	--------------------------------------------------------------------------------	NM_033381
	--------------------------------------------------------------------------------	NM_001844
	--------------------------------------------------------------------------------	NM_007734
	--------------------------------------------------------------------------------	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122840
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	--------------------------------------------------------------------------------	NM_009930
	--------------------------------------------------------------------------------	NM_032085
	--------------------------------------------------------------------------------	NM_001076831
	--------------------------------------------------------------------------------	NM_053304
	--------------------------------------------------------------------------------	NM_012929
	--------------------------------------------------------------------------------	NM_000090
	--------------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	--------------------------------------------------------------------------------	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031818
	--------------------------------------------------------------------------------	NM_152660
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	--------------------------------------------------------------------------------	NM_009930
	--------------------------------------------------------------------------------	NM_000495
cbriggsae	((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)).	0.990 -20.70

cbriggsae

chromosome:chrX:861858:861927:-1

Opposite_strand|Intronic_coding|NM_001095669|foxp2a ## Same_strand|Intronic_coding|NM_001122840|si:ch211-212m21.5 ## Opposite_strand|Intronic_non-coding|NM_152660|FAM76A ## {Repeats: no}

novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (3 loci)

sblock47 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.346	no	no	0.30/0.48	19/26/0.50	0.0 6.8	0.0 9.6	1 5	0 0	1 1	0 0	8 0	-1 -9	5arm_loop 3arm	3 3	nd nd	0.46 0.36	6 5	6	1	0	-8

		reads	miRBase family seed
seed	---------------------------------------------------UCUUAGC-------------------	1	novel
seed	-----------------------------------------UAAAUGG-----------------------------	1	novel
seed	---------------------------------------UUUAAAU-------------------------------	1	novel
seed	---------UAUAUUA-------------------------------------------------------------	1	novel
seed	-------------------------------------------------------AGCGUGA---------------	1	novel
seed	--------------------------------------AUUUAAA--------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------GTCTTAGCGTGAGGACATTAAGGTAG-	26	1
	-------------------------------------TATTTAAATGGCAGTCTTAG--------------------	20	1
	--------------------------------------ATTTAAATGGCAGTCTTAG--------------------	19	1
	------------------------------------------------------TAGCGTGAGGACATTAAGGTAGC	23	1
	--------TTATATTAAAGCTGGCTTCTGCCC---------------------------------------------	24	1
	----------------------------------------TTAAATGGCAGTCTTAGCGTGAGGAC-----------	26	1
cbriggsae	cttaggctTTATATTAAAGCTGGCTTCTGCCCtatgaTATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGC
	*****************************************************************************
cbriggsae	(((((.((((((......(((((...(((((...............)))))..)))))))))))...))))).....	0.440 -15.96

cbriggsae

chromosome:chrM:2997:3073:-1

{Repeats: no}

Page 61

miR-Intess™

block2448 [novel_shortStem_bulgeHIGH]

block2505 [novel_shortStem_bulgeHIGH]

block4111 [novel_shortStem_bulgeHIGH]

block4688 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block95 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block97 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

block176 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

block3744 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

block4329 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

sblock47 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]