other hairpins
sblock49 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.30/0.48 | 19/26/0.50 | 0.0 6.8 | 0.0 9.6 | 1 5 | 0 0 | 1 1 | 0 0 | 8 0 | -1 -9 | 5arm_loop 3arm | 3 3 | nd nd | 0.46 0.36 | 6 5 | 6 | 1 | 0 | -8 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UCUUAGC------------------- | 1 | novel |
| seed | -----------------------------------------UAAAUGG----------------------------- | 1 | novel |
| seed | ---------------------------------------UUUAAAU------------------------------- | 1 | novel |
| seed | ---------UAUAUUA------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------AGCGUGA--------------- | 1 | novel |
| seed | --------------------------------------AUUUAAA-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------GTCTTAGCGTGAGGACATTAAGGTAG- | 26 | 1 | |
| -------------------------------------TATTTAAATGGCAGTCTTAG-------------------- | 20 | 1 | |
| --------------------------------------ATTTAAATGGCAGTCTTAG-------------------- | 19 | 1 | |
| ------------------------------------------------------TAGCGTGAGGACATTAAGGTAGC | 23 | 1 | |
| --------TTATATTAAAGCTGGCTTCTGCCC--------------------------------------------- | 24 | 1 | |
| ----------------------------------------TTAAATGGCAGTCTTAGCGTGAGGAC----------- | 26 | 1 | |
| cbriggsae | cttaggctTTATATTAAAGCTGGCTTCTGCCCtatgaTATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGC | ||
| ***************************************************************************** | |||
| cbriggsae | (((((.((((((......(((((...(((((...............)))))..)))))))))))...)))))..... | 0.440 -15.96 |
| cbriggsae | chromosome:chrUn:4217060:4217136:-1 | {Repeats: no} |
sblock56 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.30/0.48 | 19/26/0.50 | 0.0 6.8 | 0.0 9.6 | 1 5 | 0 0 | 1 1 | 0 0 | 8 0 | -1 -9 | 5arm_loop 3arm | 3 3 | nd nd | 0.46 0.36 | 6 5 | 6 | 1 | 0 | -8 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UCUUAGC------------------- | 1 | novel |
| seed | -----------------------------------------UAAAUGG----------------------------- | 1 | novel |
| seed | ---------------------------------------UUUAAAU------------------------------- | 1 | novel |
| seed | ---------UAUAUUA------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------AGCGUGA--------------- | 1 | novel |
| seed | --------------------------------------AUUUAAA-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------GTCTTAGCGTGAGGACATTAAGGTAG- | 26 | 1 | |
| -------------------------------------TATTTAAATGGCAGTCTTAG-------------------- | 20 | 1 | |
| --------------------------------------ATTTAAATGGCAGTCTTAG-------------------- | 19 | 1 | |
| ------------------------------------------------------TAGCGTGAGGACATTAAGGTAGC | 23 | 1 | |
| --------TTATATTAAAGCTGGCTTCTGCCC--------------------------------------------- | 24 | 1 | |
| ----------------------------------------TTAAATGGCAGTCTTAGCGTGAGGAC----------- | 26 | 1 | |
| cbriggsae | cttaggctTTATATTAAAGCTGGCTTCTGCCCtatgaTATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGC | ||
| ***************************************************************************** | |||
| cbriggsae | (((((.((((((......(((((...(((((...............)))))..)))))))))))...)))))..... | 0.440 -15.96 |
| cbriggsae | chromosome:chrUn:4252099:4252175:1 | {Repeats: no} |
novel_lenNOK_randfoldOK (3 loci)
block1655 [novel_lenNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 17 | 3arm | 1 | nd | 0.22 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------CCGUCAA--------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------TCCGTCAACATCGTCCAG----------- | 18 | 1 | |
| cbriggsae | ttttccgagtagctaaatgataatgttggattagctggattcttctcgagtagggcagtaaaataacgctcaactgcctgcttgatggaTCCGTCAACATCGTCCAGaaatcgggaga | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214211 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001035248 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_057428 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001062274 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001005123 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001091987 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001069872 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001069872 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205075 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001037113 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_133195 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001019821 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_003333 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_003333 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001033930 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001076363 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001124194 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001126212 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001009286 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_204254 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001108057 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020265 | ||
| cbriggsae | ((((((((....((....((..(((((((......(((((((...(((((((.((((((.............))))))))))))).))))))))))))))..)).))...)))))))) | 0.990 -40.32 |
| cbriggsae | chromosome:chrIII:3285359:3285476:1 | Same_strand|Intronic_coding|NM_214211|UBA52 ## Opposite_strand|Intronic_non-coding|NM_133195|Brunol4 ## Opposite_strand|Intronic_coding|NM_001108057|Bcl11b ## Same_strand|Intronic_non-coding|NM_020265|Dkk2 ## {Repeats: no} |
block1904 [novel_lenNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 18 | 5arm | 1 | nd | 0.21 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------CUGGUUG------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------ACTGGTTGGGAAGGTTCAG-------------------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | tggaagagcgtctggatccACTGGTTGGGAAGGTTCAGaagacgtggattcttctggagacggagggttgaatttttctggagcatctgaagtctttggcggtggagacggtgattcc | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_123965 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_024349 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_008091 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_019034 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001016369 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001032772 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001040602 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001093711 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001095157 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_199692 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001033835 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047948 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_175092 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001123190 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001126828 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001010953 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001127285 | ||
| <<------------------------------------------------------------------------------------------------------------------------------ | NM_070597 | ||
| cbriggsae | .((((...((.(((..(((((((...((((.(((((((((((.((....(((((((....)))))))....)))))))))))....))....))))...)))))))..))))).)))) | 0.940 -40.50 |
| cbriggsae | chromosome:chrIV:741335:741452:-1 | Opposite_strand|Intronic_coding|NM_123965|ARAC2 ## Opposite_strand|Intronic_non-coding|NM_024349|Ak1 ## Same_strand|Intronic_coding|NM_001047948|LOC499584 ## {Repeats: no} |
block2048 [novel_lenNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 10 | 5arm | 1 | nd | 0.21 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------GUUCUUA------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------TGTTCTTACTTCACTTTGG------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | aattttaggaaatcatTGTTCTTACTTCACTTTGGaaaactcaaatgtttttgtttttttcaagtggagttagctattgtttatttcatttgaggt | ||
| ************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001105717 | ||
| ---------------------------------------------------------------------------------------------------------- | NM_198022 | ||
| ---------------------------------------------------------------------------------------------------------- | NM_020066 | ||
| cbriggsae | .((((((.(((((((..(((...(((((((.((((((((..((((....))))..))))))))))))))).)))...))...)))))...)))))) | 0.950 -20.90 |
| cbriggsae | chromosome:chrIV:3255189:3255284:-1 | Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no} |
novel_multiarm_DicerNOK_bulgeHIGH (3 loci)
sblock16 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.59/0.60 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 11 14 | 22 21 | 5arm 3arm | 4 4 | nd nd | 0.32 0.30 | 4 5 | 2 | 1 | -2 | -7 |
| reads | miRBase family seed | ||
| seed | ------------GCUAUGA------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------GCCAAUG-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------GGCTATGAAGATGCGCTCGAGG----------------------------------------------------------------------------------- | 22 | 1 | |
| ----------------------------------------------------------------------------------GGCCAATGGCGTGCGCTTTT-------------- | 20 | 1 | |
| cbriggsae | ggaagaataatGGCTATGAAGATGCGCTCGAGGcgtgggacttttttcgagaattcaaaacaatttttgtgtatggaggatgGGCCAATGGCGTGCGCTTTTcacaaagtttatcc | ||
| ******************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047975 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047939 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047939 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_127141 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001003414 | ||
| cbriggsae | (((.((((..((....((((((.((((.((.(((.((...((((...((((((((......)))))))).....))))..)).))).....)).))))))))))))..)))).))) | 0.980 -27.50 |
| cbriggsae | chromosome:chrII:8222413:8222528:-1 | Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Same_strand|Intronic_non-coding|NM_127141|SQN ## {Repeats: no} |
sblock36 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.59/0.60 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 11 14 | 22 21 | 5arm 3arm | 4 4 | nd nd | 0.32 0.30 | 4 5 | 2 | 1 | -2 | -7 |
| reads | miRBase family seed | ||
| seed | ------------GCUAUGA------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------GCCAAUG-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------GGCTATGAAGATGCGCTCGAGG----------------------------------------------------------------------------------- | 22 | 1 | |
| ----------------------------------------------------------------------------------GGCCAATGGCGTGCGCTTTT-------------- | 20 | 1 | |
| cbriggsae | ggaagaataatGGCTATGAAGATGCGCTCGAGGcgtgggacttttttcgagaattcaaaacaatttttgtgtatggaggatgGGCCAATGGCGTGCGCTTTTcacaaagtttatcc | ||
| ******************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_172925 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_065286 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_001093260 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_009573 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_130279 | ||
| cbriggsae | (((.((((..((....((((((.((((.((.(((.((...((((...((((((((......)))))))).....))))..)).))).....)).))))))))))))..)))).))) | 0.980 -27.50 |
| cbriggsae | chromosome:chrIII:2308441:2308556:1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no} |
sblock65 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.014 | no | no | 0.43/0.48 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 15 8 | 10 9 | 5arm 3arm | 1 1 | nd nd | 0.38 0.26 | 4 4 | 2 | 1 | -1 | 3 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------GGUUUGC----------------------- | 1 | novel |
| seed | ----------------GUCUUUG--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------TGTCTTTGACCATTTGATCCC-------------------------------------------------------- | 21 | 1 | |
| -------------------------------------------------------------TGGTTTGCACATGGTCCACACTT-------- | 23 | 1 | |
| cbriggsae | gccttgggaaagcatTGTCTTTGACCATTTGATCCCactctcgctactcaattggtgattgTGGTTTGCACATGGTCCACACTTttttagcc | ||
| ******************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_011764 | ||
| cbriggsae | ((..((((((((...(((....((((((.((...((((..((((((......))))))..))))....)).)))))).))))))))))))). | 0.990 -25.50 |
| cbriggsae | chromosome:chrV:15940267:15940358:1 | Same_strand|Intronic_non-coding|NM_011764|Zfp90 ## {Repeats: no} |
novel_shortStem_randfoldOK (3 loci)
block1090 [novel_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 4 | 3arm | 1 | nd | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------CUGGAUU------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------GCTGGATTGGCTTTGGATCGGG---- | 22 | 1 | |
| cbriggsae | tcgtttgatggtcctggtcttggtccagcaggttgcttcctcGCTGGATTGGCTTTGGATCGGGgcgg | ||
| ******************************************************************** | |||
| ------------------------------------------------------------------------------ | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001044671 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_177366 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001084509 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061557 | ||
| ------------------------------------------------------------------------------ | NM_020988 | ||
| cbriggsae | .((((...((((((.((((...((((((((((......))).))))))).))))..)))))).)))). | 0.990 -29.70 |
| cbriggsae | chromosome:chrII:13811335:13811402:1 | Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_001044671|MAF ## Same_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no} |
block3545 [novel_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 11 | 5arm | 2 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UUCCGGU--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----TTTCCGGTGCTGACTGGATGG-------------------------------------------------------- | 21 | 1 | |
| cbriggsae | aaagTTTCCGGTGCTGACTGGATGGcttcttgactcttcttgggcattttttgagaagttgttcgattaatctggaaattt | ||
| ********************************************************************************* | |||
| cbriggsae | .((((((((((...(((.((((..((((((((((((.....)))......)))))))))..)))).)))..)))))))))) | 1.000 -26.10 |
| cbriggsae | chromosome:chrUn:5252103:5252183:1 | {Repeats: no} |
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