miR-Intess™

other hairpins

novel_Multihit_shortStem_loopOverlap_nonpairedHIGH (1 loci)

novel_RNA_lenNOK (1 loci)

block324 [novel_RNA_lenNOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.104

Opposite_strand|Intronic_coding|NM_004198|CHRNA6

no

0.58/0.58

26/26/0.00

0.0

0.0

1

0

1

0

13

5

5arm

1

nd

0.19

2

1

1

na

na

		reads	miRBase family seed
seed	--------------UUGGCUU----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------GTTGGCTTCAGGCAGCAACCAATGGG----------------------------------------------------------------------	26	1
cbriggsae	aggttttaagtttGTTGGCTTCAGGCAGCAACCAATGGGacaaccatcatctcgcgttgctccgtttgtttggcaaatgcctcatgtgggtcagcagcatctttggcct
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_004198
	-----------------------------------------------------------------------------------------------------------------------	NM_001079560
	-----------------------------------------------------------------------------------------------------------------------	NM_001109928
	-----------------------------------------------------------------------------------------------------------------------	NM_001109948
	-----------------------------------------------------------------------------------------------------------------------	NM_079203
	-----------------------------------------------------------------------------------------------------------------------	NM_205364
	-----------------------------------------------------------------------------------------------------------------------	NM_174719
	-----------------------------------------------------------------------------------------------------------------------	NM_204416
	-----------------------------------------------------------------------------------------------------------------------	NM_001098221
	-----------------------------------------------------------------------------------------------------------------------	NM_001034114
	-----------------------------------------------------------------------------------------------------------------------	NM_001040327
	-----------------------------------------------------------------------------------------------------------------------	NM_201221
	-----------------------------------------------------------------------------------------------------------------------	NM_204814
	-----------------------------------------------------------------------------------------------------------------------	NM_001087183
	-----------------------------------------------------------------------------------------------------------------------	NM_001026507
	-----------------------------------------------------------------------------------------------------------------------	NM_001026506
	-----------------------------------------------------------------------------------------------------------------------	NM_001113843
	-----------------------------------------------------------------------------------------------------------------------	NM_009602
	-----------------------------------------------------------------------------------------------------------------------	NM_060043
	-----------------------------------------------------------------------------------------------------------------------	NM_001026508
	-----------------------------------------------------------------------------------------------------------------------	NM_060041
	-----------------------------------------------------------------------------------------------------------------------	NM_145129
	-----------------------------------------------------------------------------------------------------------------------	NM_024354
	-----------------------------------------------------------------------------------------------------------------------	NM_060042
	-----------------------------------------------------------------------------------------------------------------------	NM_000743
	-----------------------------------------------------------------------------------------------------------------------	NM_000744
	-----------------------------------------------------------------------------------------------------------------------	NM_052805
	.........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------	NM_060006
cbriggsae	(((((..(((.((((((((((.(((((((.((.(((((..((((...........))))..))))).))...))...))))).....))))))))))...))).)))))	0.480 -32.00

cbriggsae

chromosome:chrI:5619546:5619654:1

Opposite_strand|Intronic_coding|NM_004198|CHRNA6 ## Opposite_strand|Boundary_non-coding|NM_060006|F53B6.4 ## {Repeats: no}

novel_cloningHIGH_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)

block4780 [novel_cloningHIGH_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.331

no

no

0.38/0.45

19/27/0.82

1.3

0.2

19

0

1

0

5

5

5arm

4

nd

0.36

4

33

1

na

na

		reads	miRBase family seed
seed	----------CUUCAGA------------------------------------------------------------------	7	novel
seed	--------ACCUUCA--------------------------------------------------------------------	6	novel
seed	---------CCUUCAG-------------------------------------------------------------------	6	novel
seed	-----------UUCAGAC-----------------------------------------------------------------	5	novel
seed	-------UACCUUC---------------------------------------------------------------------	4	novel
seed	------AUACCUU----------------------------------------------------------------------	3	novel
seed	----CGAUACC------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------CCTTCAGACCACTTGTCATTT-----------------------------------------------------	21	6
	--------ACCTTCAGACCACTTGTCATTT-----------------------------------------------------	22	4
	----------CTTCAGACCACTTGTCATTT-----------------------------------------------------	20	3
	-----GATACCTTCAGACCACTTGTCATTTT----------------------------------------------------	26	3
	-------TACCTTCAGACCACTTGTCATTT-----------------------------------------------------	23	3
	------ATACCTTCAGACCACTTGTCATTT-----------------------------------------------------	24	2
	---TCGATACCTTCAGACCACTTGTCATTT-----------------------------------------------------	27	2
	-------TACCTTCAGACCACTTGTCATT------------------------------------------------------	22	2
	------ATACCTTCAGACCACTTGTCATT------------------------------------------------------	23	2
	----------CTTCAGACCACTTGTCATTTT----------------------------------------------------	21	1
	----------CTTCAGACCACTTGTCATT------------------------------------------------------	19	1
	--------ACCTTCAGACCACTTGTCATT------------------------------------------------------	21	1
	--------ACCTTCAGACCACTTGTCATTTT----------------------------------------------------	23	1
	-------TACCTTCAGACCACTTGTCATTTT----------------------------------------------------	24	1
	---------CCTTCAGACCACTTGTCATT------------------------------------------------------	20	1
cbriggsae	tcttcGATACCTTCAGACCACTTGTCATTTTttaaatgtttttttggattttgaacaattggcaaaatcaaggactaaaagaa
	***********************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...............................................................	NM_065481
cbriggsae	((((.....((((....(((.((((((...((((((......))))))...))).))).))).......)))).....)))).	0.920 -11.90

cbriggsae

chromosome:chrX:20313646:20313728:-1

Opposite_strand|Boundary_non-coding|NM_065481|B0284.1 ## {Repeats: no}

novel_cloningHIGH_nonpairedHIGH (1 loci)

block1270 [novel_cloningHIGH_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.141

no

no

0.55/0.59

18/22/0.98

0.0

0.0

101

0

1

0

25

5

5arm

1

nd

0.32

3

119

1

na

na

		reads	miRBase family seed
seed	--------------------------AUGACAC----------------------------------------------------------------------	118	miR-64
seed	---------------------------UGACACA---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------CATGACACACTGGCTGGTCTGG--------------------------------------------------------	22	101
	-------------------------CATGACACACTGGCTGGTCT----------------------------------------------------------	20	12
	-------------------------CATGACACACTGGCTGGTCTG---------------------------------------------------------	21	4
	--------------------------ATGACACACTGGCTGGTC-----------------------------------------------------------	18	1
	-------------------------CATGACACACTGGCTGGT------------------------------------------------------------	18	1
cbriggsae	gcctattctactcggcctcgccgacCATGACACACTGGCTGGTCTGGaatgatttcggctcctccggtccgcccgagtgccacgaaacggcgagagccttggc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	-----------------------------------------------------------------------------------------------------------------	NM_001077612
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065190
	-----------------------------------------------------------------------------------------------------------------	NM_001129219
cbriggsae	(((..........((((((((((....((.(((...(((.((.(((((..((.......)).))))).)))))...))).)).....))))))).)))..)))	0.400 -36.60

cbriggsae

chromosome:chrIII:219041:219143:-1

Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no}

novel_cloningOK_Multihit (1 loci)

block1819 [novel_cloningOK_Multihit]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.593

no

no

0.50/0.57

21/23/1.00

0.0

0.3

7

0

1

0

7

9

3arm

20

nd

0.22

3

9

1

na

na

		reads	miRBase family seed
seed	------------------------------------------------------CCUUAGG----------------------	7	novel
seed	---------------------------------------------------------UAGGUCG-------------------	1	novel
seed	----------------------------------------------------------AGGUCGC------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------TCCTTAGGTCGCTGGTTCGAATC-------	23	5
	-----------------------------------------------------TCCTTAGGTCGCTGGTTCGAAT--------	22	2
	---------------------------------------------------------TAGGTCGCTGGTTCGAATCCG-----	21	1
	--------------------------------------------------------TTAGGTCGCTGGTTCGAATCCG-----	22	1
cbriggsae	cgtgccgtcgatagctcagttgatagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcg
	***********************************************************************************
	---------------------------------------------------------------------------------------------	NM_001039389
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_135472
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_164874
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205951
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092606
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001004296
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	---------------------------------------------------------------------------------------------	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067378
	---------------------------------------------------------------------------------------------	NM_001031045
	---------------------------------------------------------------------------------------------	NM_133381
cbriggsae	((.((((((((..((.(((.((((..((.(((..((((......)))).....)))))..)))))))))))))...)))).))	0.480 -24.00

cbriggsae

chromosome:chrIII:11617805:11617887:1

Opposite_strand|Intronic_non-coding|NM_001039389|Wdr37 ## Same_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Same_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

novel_cloningOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (1 loci)

block4119 [novel_cloningOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.525

no

no

0.50/0.63

20/27/0.93

4.8

4.1

10

0

1

0

9

-8

3arm

20

nd

0.40

3

14

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------CCUUAGG-------------------------------------	7	novel
seed	---------------------------------------------------------------CGAAUCC---------------------	3	novel
seed	---------------------------------------------------AGGUCGC---------------------------------	1	novel
seed	-------------------------------------------------------CGCUGGU-----------------------------	1	novel
seed	------------------------------------------------------------GUUCGAA------------------------	1	novel
seed	--------------------------------------------------UAGGUCG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------TCCTTAGGTCGCTGGTTCGAATC----------------------	23	5
	--------------------------------------------------------------TCGAATCCGGCTCGACGGAA---------	20	3
	----------------------------------------------TCCTTAGGTCGCTGGTTCGAAT-----------------------	22	2
	------------------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA----------	27	1
	-------------------------------------------------TTAGGTCGCTGGTTCGAATCCG--------------------	22	1
	--------------------------------------------------TAGGTCGCTGGTTCGAATCCG--------------------	21	1
	-----------------------------------------------------------GGTTCGAATCCGGCTCGACGGAA---------	23	1
cbriggsae	tcgatagctcagttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAAttgtttttg
	*******************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-----------------------------------------------------------------------------------------------------	NM_011821
	-----------------------------------------------------------------------------------------------------	NM_134696
	-----------------------------------------------------------------------------------------------------	NM_001040230
	-----------------------------------------------------------------------------------------------------	NM_134696
	-----------------------------------------------------------------------------------------------------	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001041377
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001042144
	-----------------------------------------------------------------------------------------------------	NM_001079844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_207352
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070729
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007253
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133969
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114375
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073089
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114364
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040233
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039441
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001112752
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136628
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034373
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079859
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080304
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_143763
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114388
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001015810
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097919
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001015770
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016020
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097657
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114374
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001879
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130521
cbriggsae	.(((.(((....((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).))...))).)))	0.440 -23.10

cbriggsae

chromosome:chrV:11213830:11213920:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_011821|Gpc6 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001041377|ECU05_1680 ## {Repeats: no}

novel_cloningOK_Multihit_randfoldOK_bulgeHIGH (1 loci)

block5072 [novel_cloningOK_Multihit_randfoldOK_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.35/0.40

19/21/0.83

0.0

0.0

3

0

1

0

8

25

5arm

14

nd

0.25

4

6

1

na

na

		reads	miRBase family seed
seed	---------GAAUAAG------------------------------------------------------------------------------------------------------	5	novel
seed	----------AAUAAGU-----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GGAATAAGTAGTACCAATGG------------------------------------------------------------------------------------------	20	3
	---------GAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	20	1
	--------GGAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	21	1
	--------GGAATAAGTAGTACCAATG-------------------------------------------------------------------------------------------	19	1
cbriggsae	acttactcGGAATAAGTAGTACCAATGGtactacttactcggaataagtagtaccaattcgatactacttactcggaataagtagtaccaattcgatactacttactcggaataagta
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_011978
cbriggsae	(((((.((.((.(((((((((....((((((((((((.((.((.(((((((((.........))))))))).)).)).))))))))))))......))))))))).)).)).))))).	1.000 -48.90

cbriggsae

chromosome:chrX:14750527:14750644:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

novel_cloningOK_loopOverlap_nonpairedHIGH (1 loci)

block2483 [novel_cloningOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.190

no

no

0.40/0.43

20/21/1.00

0.0

0.0

4

0

1

0

33

-4

3arm_loop

1

nd

0.33

3

5

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------CGAGUCG----------------------------------------------	5	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------TCGAGTCGAGTATTAGTTCTG---------------------------------	21	4
	----------------------------------------------------------TCGAGTCGAGTATTAGTTCT----------------------------------	20	1
cbriggsae	ttattgaaaatttctgtttcaaaaagattgttttaattggcttgacaattcaattcatTCGAGTCGAGTATTAGTTCTGataaatttaaagttttggttcagagacgcagtg
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_020714
	--------------------------------------------------------------------------------------------------------------------------	NM_068273
	--------------------------------------------------------------------------------------------------------------------------	NM_068260
	--------------------------------------------------------------------------------------------------------------------------	NM_071298
	--------------------------------------------------------------------------------------------------------------------------	NM_060105
	--------------------------------------------------------------------------------------------------------------------------	NM_071271
cbriggsae	.(((((....((((((..((((((...(((((..((((((((((((................)))))))..)))))..)))))........))))))..))))))..)))))	0.710 -21.09

cbriggsae

chromosome:chrIV:2781621:2781732:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## Opposite_strand|Intronic_coding|NM_068273|str-155 ## {Repeats: no}

novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK (1 loci)

sblock86 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.26/0.40

19/21/0.67

0.0 0.7

0.0 0.7

6 3

0 0

1 1

0 0

24 36

7 -6

5arm 3arm_loop

14 14

nd nd

0.15 0.32

1 3

15

1

13

0

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------GAAUAAG---------------	5	novel
seed	-------------------------GAAUAAG---------------------------------------------------------------------------------	5	novel
seed	---------------------------------------------------------GAAUAAG-------------------------------------------------	2	novel
seed	-----------------------------------------------------------AUAAGUA-----------------------------------------------	1	novel
seed	--------------------------AAUAAGU--------------------------------------------------------------------------------	1	novel
seed	--------------------------------------------------------------------------------------------AAUAAGU--------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------------------------------GGAATAAGTAGTACCAATGG---	20	3
	------------------------GGAATAAGTAGTACCAATGG---------------------------------------------------------------------	20	3
	--------------------------------------------------------GGAATAAGTAGTACCAATA--------------------------------------	19	2
	-------------------------GAATAAGTAGTACCAATGGT--------------------------------------------------------------------	20	1
	-------------------------------------------------------------------------------------------GAATAAGTAGTACCAATGGT--	20	1
	------------------------GGAATAAGTAGTACCAATG----------------------------------------------------------------------	19	1
	------------------------------------------------------------------------------------------GGAATAAGTAGTACCAATGGT--	21	1
	------------------------GGAATAAGTAGTACCAATGGT--------------------------------------------------------------------	21	1
	------------------------------------------------------------------------------------------GGAATAAGTAGTACCAATG----	19	1
	----------------------------------------------------------AATAAGTAGTACCAATATG------------------------------------	19	1
cbriggsae	gtaccaattcgatactactcactcGGAATAAGTAGTACCAATGGtactactcactcGGAATAAGTAGTACCAATAtggtactaattactcGGAATAAGTAGTACCAATGGtac
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_011978
cbriggsae	((((((......(((((((...((.((.(((.((((((((.((((((((((...........))))))))))...)))))))).))).)).))...)))))))....))))))	0.500 -41.80

cbriggsae

chromosome:chrX:14751611:14751723:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

novel_cloningOK_nonpairedHIGH (1 loci)

block2441 [novel_cloningOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.628

no

no

0.50/0.50

20/20/1.00

0.0

0.0

5

0

1

0

10

21

3arm

1

nd

0.40

3

5

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UUCGAUU----------------------	5	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------TTTCGATTGCACTGGTTCCG----------	20	5
cbriggsae	ctgacagttgagcaatgcggtcgtctatttccaacctgtttcaaaacttccttaaccgttctttgaatataccttttgttagTTTCGATTGCACTGGTTCCGaaaatcgtta
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182271
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070350
cbriggsae	.((((.(((((((..((((((((...(((..(((...((((((((................))))))...))...)))..)))..))))))))...))))....))).))))	0.950 -17.79

cbriggsae

chromosome:chrIV:2156443:2156554:1

Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

novel_cloningOK_shortStem (1 loci)

block2516 [novel_cloningOK_shortStem]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.764

no

no

0.60/0.62

20/21/1.00

0.0

0.4

5

0

1

0

1

10

5arm

1

nd

0.25

3

5

1

na

na

		reads	miRBase family seed
seed	--CGGUCAU--------------------------------------------------------------------	5	novel
		len	cloning frequencies
			AF16
	-TCGGTCATGATTCGCCCTGG--------------------------------------------------------	20	3
	-TCGGTCATGATTCGCCCTGGG-------------------------------------------------------	21	2
cbriggsae	tTCGGTCATGATTCGCCCTGGGtttgtaaaatgagacaatttgaattccctccagatctgaatttttttcattgaaa
	*****************************************************************************
	---------------------------------------------------------------------------------------	NM_001105717
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	((((((...((((((..(((((......((((......))))........)))))...))))))......)))))).	0.840 -10.14

cbriggsae

chromosome:chrIV:3208224:3208300:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

Back to summary page

other hairpins:

Page 1

Jump 10 pages back

Previous page

Page 67

Next page

Page 70