other miRBase miRNAs
miRNAknown_randfoldOK_bulgeHIGH (1 loci)
miRNAknown_rep_multiarm_DicerNOK_randfoldOK (1 loci)
cel-mir-800
| absolute | CE1 |
| cel-mir-800 5arm | 1 |
| normalized | CE1 |
| cel-mir-800 5arm | 0.001 |
sblock60 (miRBase cel-mir-800) [miRNAknown_rep_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-800 | 0.001 | no | Satellite,UNKNOWN | 0.48/0.50 | 21/22/1.00 | 0.0 nd | 0.0 nd | 1 0 | 0 0 | 1 0 | 0 0 | 8 4 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.05 0.09 | 1 1 | 1 | 1 | 3 | 4 |
| reads | miRBase family seed | ||
| seed | ----------------------------GACAAUU------------------------------------------------------------------------------ | 1 | novel |
| seed | -------------------------------------------------------------------------AAACUCG--------------------------------- | 0 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------TGACAATTTCCGAGTTAGGCC----------------------------------------------------------------- | 21 | 1 | |
| cel-miR-800 | ------------------------------------------------------------------------CAAACTCGGA---------------AATTGTCTGCCG---- | 22 | - |
| celegans | -------------------ACGGCGGCTGACAATTTCCGAGTTAGGCCAC---TCTTATAATCAGTG---GCCAAACTCGGA---------------AATTGTCTGCCGCCGT | ||
| cremanei | --------------------GGACAA-------TTCCGAGAT-----------TCCGAAATTCCGAAATTTTGAAACTCGGA--------------CATTTTTTAGTGTCC-- | ||
| cbriggsae | ---------------------GATATTCTAATATTTCGAATT-----------TCTGAAAATCCGAGTTTTCGAAACTCGGA--------------AATTCGAATATT----- | ||
| cbrenneri | -----------------------TAA-------GTTCTACATATAACCGATGTTATGCTTATTGG-----TCGAAACTCGGA--------------AATGTGAATTGG----- | ||
| cjaponica | GTGGAAAAGTTGCAAGTCTGCGGTGCAGTTT--TTCCTGAAT-----------TTTACAACTCTTTCAGTACAAAACTCGTA-----------------CCGCAGACTTGCAA | ||
| ppacificus | ATGGCCCGAAATGGGATCAAAGGCAGTCGT---TTTCGAGTTCCGACGGAGCGTTTTAACTTCCGGAA--TTGAAACTCGAAGGGCGTGGGCAACGAATCAGAGGGGACACGT | ||
| * * * * * ******* * | |||
| celegans | ((((((((.(((((((((((((((.(((((( (.........)))) ))).)))))))) ))))))).)))))))) | 1.000 -54.70 | |
| cremanei | (((((. .((((((.( (.(((((((....))))))))).)))))) ..........))))) | 0.932 -16.10 | |
| cbriggsae | (((((((.(((.((((((.(( ((.((((((....)))))))))).))))) )))).))))))) | 0.618 -16.30 | |
| cbrenneri | ..( ((((.((((....((((.(((.((((....)) .)).))))))). .))))))))).. | 0.825 -11.90 | |
| cjaponica | .........(((((((((((((((((((((( (..(((((. ...........)))))...)))))).))) )))))))))))))) | 1.000 -39.00 | |
| ppacificus | .((.(((....(((..((....((...((( (((((((((.((((((((.((....)))))))... ))).)))))))))).))...))...)).)))..)))..))... | 0.883 -29.10 |
| celegans | chromosome:X:380920:380992:-1 | intergenic ## {Repeats: Ce000146 154 175 -1 class=UNKNOWN,Ce000146 114 136 -1 class=UNKNOWN} ## {SimpF: CEOPX174 1 Operon,WRM066aD01 -1 fosmid,WRM069bH07 -1 fosmid,WRM0624dG06 -1 fosmid,WRM068bD10 -1 fosmid,WRM0612cG04 -1 fosmid,WRM061dE09 -1 fosmid} ## {MIR: cel-mir-800} |
| cremanei | chromosome:chrUn:130371960:130372072:-1 | intergenic ## {SimpF: trf,trf,trf,trf} |
| cbriggsae | chromosome:chrIII:12219361:12219473:-1 | Opposite_strand|Intronic_coding|NM_001122952 ## Same_strand|Intronic_coding|NM_075505 ## {Repeats: MINISAT4_CB 63 495 -1 class=Satellite} ## {SimpF: trf} |
| cbrenneri | chromosome:chrUn:191649389:191649501:-1 | intergenic |
| cjaponica | chromosome:chrUn:104843643:104843725:-1 | intergenic |
| ppacificus | chromosome:chrUn:15323722:15323829:-1 | Same_strand|Intronic_coding|NM_001055022 |
miRNAknown_shortStem_randfoldOK (1 loci)
cel-lsy-6
| absolute | CE1 |
| cel-lsy-6 3arm | 3 |
| normalized | CE1 |
| cel-lsy-6 3arm | 0.002 |
block7269 (miRBase cel-lsy-6) [miRNAknown_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-lsy-6 | 0.001 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 4 | 5 | 3arm | 1 | nd | 0.10 | 1 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------UUUGUAU--------------------------------------------- | 3 | lsy-6 |
| len | cloning frequencies | ||
| CE1 | |||
| cel-lsy-6 | -----------------------------------------------------------------------------TTTTGTATGAGACGCATTT------------------CG-------------- | 21 | 3 |
| celegans | ---------------------CCATCAAATGCGTCTAGTATCAAAATCATGTA----AAAACTGTAAAA----CAGATTTTGTATGAGACGCATTT------------------CGATGA---------- | ||
| cbriggsae | -----------------CCTTCCACAGAATGCGTCCAGTATCAAAATCACA------TCAAAGAGAATACGG-TGGATTTTGTATGAGACGCATTC----------------CGTGGCGGG--------- | ||
| cjaponica | GATTAATT------------GCCACTGGATGCGTCGAATAACAAAATCGAGTGTTCTTACTTTGAAGTATAA-CTGATTTTGTATGAGACGCATTC------------------CAGTGGCATTCTGATC | ||
| cbrenneri | TATTGCTGTTCAAAAAACTTGCCACAGAATGCGTCGAATATCAAAATCATG------TCAA----AATATGGATAGATTTTGTATGAGACGCATTTCCGTGGCTGCAATGAACGTGGCGGTG-------- | ||
| cremanei | TTTTGATT---------TCCGCCACCGACTGCTTCGAATACCAAAATCATGGG----TAATCTACAGTATGC-CAGATTTTGTATGAGACGCATTC----------------AGTGGCGGGAAGACAAGA | ||
| *** *** ** * ** ******* * * ******************** * | |||
| celegans | .((((((((((((((.(((.(((((((.(((. ...........) )))))))))))).)))))))))) .)))). | 1.000 -26.90 | |
| cbriggsae | (((.((((.(((((((((..(((.(((((((.(( ((...........)) ))))))))))))..))))))))) .)))).))) | 1.000 -36.30 | |
| cjaponica | (((((..( (((((((((((((((..((.((((((((.(((.....((((....))))..) ))))))))))))..))))))).) ))))))))...))))) | 0.998 -44.30 | |
| cbrenneri | ((((((((((((........(((((.(((((((((..(((.(((((((.(( ((.. ......))))))))))))))..)))))))))..))))).....)))))..))))))) | 0.995 -41.62 | |
| cremanei | (((((.(( ((((((((.((.(((.((..(((.(((((((...(( ((..........))) ).))))))))))..)).))).)) .))))))))))..))))) | 1.000 -38.20 |
| celegans | chromosome:V:10647206:10647278:1 | intergenic ## {SimpF: WRM061cD11 1 fosmid,WRM0635bF11 1 fosmid,WRM0628bA07 1 fosmid} ## {MIR: cel-lsy-6} |
| cbriggsae | chromosome:chrV:7813062:7813142:-1 | Same_strand|Intronic_coding|NM_073462 ## Opposite_strand|Intronic_coding|NM_070877 ## {MIR: cbr-lsy-6} |
| cjaponica | chromosome:chrUn:8397009:8397107:1 | Opposite_strand|Intronic_coding|NM_022073 |
| cbrenneri | chromosome:chrUn:66936444:66936555:1 | intergenic |
| cremanei | chromosome:chrUn:57701747:57701846:1 | Same_strand|Intronic_coding|NM_001114256 |
| Back to summary page | other miRBase miRNAs: | Page 1 | Page 2 |
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