other hairpins
novel_lenNOK_nonpairedHIGH_bulgeHIGH (22 loci)
block2127 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.684 | no | no | 0.56/0.58 | 25/26/0.00 | 0.0
| 0.5
| 2
| 0
| 1
| 0
| 17
| 11
| 3arm
| 1
| nd
| 0.38
| 4
| 2 | 1 | na | na |
seed | -----------------------------------------------------------------------UGUGUGG----------------------------------- | 2 | novel |
| | | CE1 |
| ----------------------------------------------------------------------GTGTGTGGCGGCACGGTAACTGTTT------------------ | 25 | 1 |
| ----------------------------------------------------------------------GTGTGTGGCGGCACGGTAACTGTTTC----------------- | 26 | 1 |
celegans | cacattgaaataatccaaagcgaaactgacagttttacatttgatggtgagttgttcgatcaaatatctaGTGTGTGGCGGCACGGTAACTGTTTCggatttcggagcattgt | |
| ***************************************************************************************************************** | |
celegans | .(((.((....(((((.(((((..((((...((..((((((.((((.(((.........)))..)))).))))))..))....))))...))))).)))))......)).))) | 0.900 -23.50 |
celegans | chromosome:II:842769:842881:1 | intergenic ## {SimpF: WRM068cE11 1 fosmid,WRM0622dC12 1 fosmid,F28A10.9 1 Expression_profile,WRM0627cG11 1 fosmid,WRM062cB08 1 fosmid,WRM0638dH08 1 fosmid,WRM0629aG02 1 fosmid,WRM067dE12 1 fosmid,WRM0626dF08 1 fosmid,WRM066aC01 1 fosmid,WRM0636cH07 1 fosmid,WRM061aB10 1 fosmid} |
block2378 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.970 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 22
| 15
| 5arm
| 1
| nd
| 0.44
| 4
| 1 | 1 | na | na |
seed | -----------------------UGAAUAA--------------------------------------------------------------------------------------- | 1 | novel |
| | | CE1 |
| ----------------------GTGAATAAGTGATGACAG----------------------------------------------------------------------------- | 18 | 1 |
celegans | gtctagtgaaggcgtaaaagtgGTGAATAAGTGATGACAGctttttcttcttgtctgattgatttgattcgaattgttgtaaagaccatctgccatctgaacttgtcgaggtgtgac | |
| ********************************************************************************************************************* | |
celegans | (((.......((((....((((((..((..((....(((((..(((..((..(((.....)))..))...)))..)))))....)).))..)))).)).....)))).......))) | 0.760 -20.44 |
celegans | chromosome:II:7493774:7493890:1 | intergenic ## {SimpF: WRM0619cF06 1 fosmid,WRM0613dH09 1 fosmid,WRM0621bG05 1 fosmid,WRM0621dE08 1 fosmid,WRM0611cE04 1 fosmid,WRM0633aE12 1 fosmid} |
block3061 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.638 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 34
| 0
| 3arm
| 1
| nd
| 0.37
| 4
| 1 | 1 | na | na |
seed | --------------------------------------------------------------GAUGAGU--------------------------------------------- | 1 | novel |
| | | CE1 |
| -------------------------------------------------------------GGATGAGTAGGAGTTGAAG---------------------------------- | 19 | 1 |
celegans | tctctcggttttcgggcactctcgctgctgtcggagctggagccataactgtatttggattGGATGAGTAGGAGTTGAAGatcctgatagttttgaaggtgcggcttttaggga | |
| ****************************************************************************************************************** | |
celegans | (((((.((((.....((((..(((..(((((((((.((..(((....(((.(((((.....))))))))....)))..)).))).))))))..)))..))))))))...))))) | 0.460 -29.30 |
celegans | chromosome:III:6905840:6905953:-1 | intergenic ## {SimpF: T07E3.3 -1 Expression_profile,WRM0619bC05 -1 fosmid,WRM0631dH02 -1 fosmid,WRM0641dA07 -1 fosmid,WRM0626cC01 -1 fosmid,WRM0614bF02 -1 fosmid,WRM0627bE11 -1 fosmid,WRM0627bD12 -1 fosmid} |
block3076 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.141 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 15
| 0
| 5arm
| 1
| nd
| 0.33
| 4
| 1 | 1 | na | na |
seed | ----------------GAUGACG------------------------------------------------------ | 1 | novel |
| | | CE1 |
| ---------------GGATGACGACATTAATAT-------------------------------------------- | 18 | 1 |
celegans | ggaatcggattcactGGATGACGACATTAATATaaaaaactaaaagtgtaaatgttctttccatcattccccacccc | |
| ***************************************************************************** | |
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................................... | T20H4.2 T20H4.2 T20H4.2 |
celegans | ((....(((.....((((....((((((.((((............)))).))))))...))))....)))....)). | 0.990 -11.80 |
celegans | chromosome:III:7241269:7241345:-1 | Opposite_strand|Boundary_non-coding|T20H4.2|T20H4.2 ## T20H4.2|protein_coding|T20H4.2|T20H4.2 [Source:RefSeq_peptide;Acc:NP_498597] ## {SimpF: WRM0613bC02 -1 fosmid,WRM069cD05 -1 fosmid,WRM0622aE05 -1 fosmid,WRM061aF10 -1 fosmid} |
block4017 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.274 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 24
| 2
| 5arm
| 1
| nd
| 0.39
| 4
| 1 | 1 | na | na |
seed | -------------------------AUAACAG-------------------------------------------------------------- | 1 | novel |
| | | CE1 |
| ------------------------GATAACAGGAAGGTTGGG---------------------------------------------------- | 18 | 1 |
celegans | catctgaataataataataatatgGATAACAGGAAGGTTGGGaaaagcttcgaacaaccggtcgggaattcacagtgaatttgttggggggtgc | |
| ********************************************************************************************** | |
celegans | (((((...((((((........(((((....((..(((((.(((....)))...)))))..))....)))))........))))))..))))). | 0.780 -17.29 |
block4145 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.162 | no | no | 0.62/0.63 | 19/21/0.50 | 0.0
| 1.0
| 2
| 0
| 1
| 0
| 12
| 5
| 5arm
| 1
| nd
| 0.52
| 4
| 2 | 1 | na | na |
seed | -------------CGCCGAG-------------------------------------------------------------- | 2 | novel |
| | | CE1 |
| ------------CCGCCGAGTTCTTGACCACAC------------------------------------------------- | 21 | 1 |
| ------------CCGCCGAGTTCTTGACCAC--------------------------------------------------- | 19 | 1 |
celegans | gtagcgtagacgCCGCCGAGTTCTTGACCACACttttgcaaattttaaaggaaatgtgaagttttaaggtgtccgtgcctac | |
| ********************************************************************************** | |
| -------------------------------------------------------------------------------------------- | ZK185.2 ZK185.2 ZK185.2 |
celegans | ((((((..((((((....((..(((.((....((((((.......))))))....)).)))..))..))))))..))).))) | 0.860 -21.10 |
celegans | chromosome:IV:4538650:4538731:-1 | Opposite_strand|Intronic_coding|ZK185.2|ZK185.2 ## ZK185.2|protein_coding|ZK185.2|ZK185.2 encodes an ortholog of human SLC41A1 (OMIM:610801) and bacterial MgtE. like its orthologs, ZK185.2 is predicted to transport Mg(2+) into cells. ZK185.2 is paralogous to K07H8.2 and ZK1053.6, and has no obvious function in mass RNAi assays. [Source: WormBase] ## {SimpF: WRM0619bB07 -1 fosmid} |
block4477 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.047 | no | no | 0.27/0.27 | 26/26/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 10
| 0
| 3arm
| 1
| nd
| 0.38
| 4
| 1 | 1 | na | na |
seed | -----------------------------------------------------CAAAUGA---------------------------- | 1 | novel |
| | | CE1 |
| ----------------------------------------------------GCAAATGATTTGAATTCTTGATTCTT---------- | 26 | 1 |
celegans | tgattcagcagtttcacaacttttttgatcaggtgttttcattattttatatGCAAATGATTTGAATTCTTGATTCTTctgatcttca | |
| **************************************************************************************** | |
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................... | W08D2.8 W08D2.8 kin-21 |
celegans | .((.((((.((..(((......(((.(((((..(((................)))..))))).)))....)))..)).))))...)). | 0.840 -14.79 |
block5360 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.284 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 11
| 28
| 5arm
| 1
| nd
| 0.44
| 5
| 1 | 1 | na | na |
seed | ------------AUUUCUU---------------------------------------------------------------------------------------------- | 1 | novel |
| | | CE1 |
| -----------TATTTCTTCTCAAGTTTC------------------------------------------------------------------------------------ | 18 | 1 |
celegans | aaaaagcttatTATTTCTTCTCAAGTTTCaaataaacagtttcaataaaaagatacccattgtggtatatgttaaattgtgtataattatcttgtgaaaatgttgaatttttt | |
| ***************************************************************************************************************** | |
| --------------------------------------------------------------------------------------------------------------------------- | H06H21.10a H06H21.10 tat-2 |
| --------------------------------------------------------------------------------------------------------------------------- | H06H21.10b H06H21.10 tat-2 |
celegans | ((((((.(((.((((..(((.((((......(((.(((((((.((((.....(((((......))))).))))))))))).)))......)))).))))))).))).)))))) | 1.000 -16.40 |
celegans | chromosome:IV:4830193:4830305:1 | Opposite_strand|Intronic_coding|H06H21.10a|H06H21.10 ## H06H21.10|protein_coding|tat-2|H06H21.10a [Source:RefSeq_peptide;Acc:NP_001023252] ## {SimpF: H06H21.10 1 Expression_profile,WRM0631cB02 1 fosmid} |
block5409 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.207 | no | no | 0.48/0.52 | 21/25/0.33 | 0.0 0.0
| 0.0 0.0
| 2 1
| 0 0
| 1 1
| 0 0
| 2 12
| 7 1
| 5arm 5arm
| 2 2
| nd nd
| 0.36 0.33
| 3 4
| 3 | 1 | na | na |
seed | ---CAGCAAA-------------------------------------------------------------------- | 2 | novel |
seed | -------------ACAUGCA---------------------------------------------------------- | 1 | novel |
| | | CE1 |
| --GCAGCAAAGTGACATGCAGATAGTC--------------------------------------------------- | 25 | 2 |
| ------------GACATGCAGATAGTCCAACGG--------------------------------------------- | 21 | 1 |
celegans | gaGCAGCAAAGTGACATGCAGATAGTCCAACGGgctcatcatatttccgtcgttttgtcgcgtttatacgatgtgctt | |
| ****************************************************************************** | |
celegans | (((((.((..(((..((((.(((((....(((((...........)))))....)))))))))...)))..))))))) | 0.500 -17.60 |
block5826 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]
Hairpin parameters
no | 0.402 | no | no | 0.28/0.28 | 25/25/0.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 7
| 0
| 5arm
| 2
| nd
| 0.32
| 4
| 2 | 1 | na | na |
seed | --------AUUUGUG-------------------------------------------------- | 2 | novel |
| | | CE1 |
| -------GATTTGTGATTGTAAACGAAAATTG--------------------------------- | 25 | 2 |
celegans | ttgccacGATTTGTGATTGTAAACGAAAATTGatagtaatgaatgtttttcacactgattgtcga | |
| ***************************************************************** | |
celegans | .....(((((((((((....(((((...((((....))))...))))).)))))..))))))... | 0.800 -9.70 |