other hairpins
block4787 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.261 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 13 | 5arm | 1 | nd | 0.16 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------AGGCAAG---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------TAGGCAAGAGCGGGTGAAG----------------------------------------------------------------------------- | 19 | 1 | |
| celegans | tttcacaattgaaataatgcatTAGGCAAGAGCGGGTGAAGaaaaattggtattaaatatttatctgaaatgaagattatttttacttgtttacctagttttaacattttgcagtgaa | ||
| ********************************************************************************************************************** | |||
| celegans | .(((((...((((((.....((((((...(((((((((((((..((((..((((..............))))..)))).))))))))))))).))))))......))))))..))))) | 0.430 -20.24 |
| celegans | chromosome:IV:14435267:14435384:-1 | intergenic ## {SimpF: WRM0622dH07 -1 fosmid,WRM0610aG11 -1 fosmid} |
block4797 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.475 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 2 | 5arm | 1 | nd | 0.21 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------UGCUUUG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------TTGCTTTGAAAGGGCCATG----------------------------------------------------- | 19 | 1 | |
| celegans | aatcttctggcaactttgatgttttcgtTTGCTTTGAAAGGGCCATGaaattttttttgaaccgtttcgagaagtcaacaaatattactttaaagagatt | ||
| **************************************************************************************************** | |||
| celegans | ((((.(((........((((((((..(((.(((((((((((..((.(((....))).))..)).))))))..))).)))))))))))......))))))) | 0.910 -15.64 |
| celegans | chromosome:IV:14509883:14509982:-1 | intergenic ## {SimpF: WRM0613aE08 -1 fosmid} |
block4910 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.25/0.26 | 19/20/0.50 | 0.0 | 0.5 | 2 | 0 | 1 | 0 | 6 | 0 | 3arm | 1 | nd | 0.10 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------UCAUUCU------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------TTCATTCTTCAAATGTCTTT------ | 20 | 1 | |
| ------------------------------------TTCATTCTTCAAATGTCTT------- | 19 | 1 | |
| celegans | ctttttaaatacgttttcgattgaaaatgaaaataaTTCATTCTTCAAATGTCTTTaaacag | ||
| ************************************************************** | |||
| celegans | ((.((((((.((((......(((((((((((.....)))))).))))))))).)))))).)) | 0.980 -8.70 |
| celegans | chromosome:IV:15277378:15277439:-1 | intergenic ## {SimpF: WRM0626dG08 -1 fosmid,WRM0613cA05 -1 fosmid,WRM069aD04 -1 fosmid,WRM0615cG05 -1 fosmid} |
block4938 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.294 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 22 | 13 | 3arm | 1 | nd | 0.26 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------GAACGAG--------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------TGAACGAGAATCAGTAAGG---------------------- | 19 | 2 | |
| celegans | gttttgcgggaatgctttcaaatacctgatctgattcaaaatgctcttataaagtttgataggtcagttattgtaaTGAACGAGAATCAGTAAGGaatcggtaagtaatttggaaaa | ||
| ********************************************************************************************************************* | |||
| celegans | .((((.((((..(((((.......(((...(((((((....((.((((((((...((((....))))...)))))).)).)).)))))))..))).......))))).)))).)))) | 0.560 -20.64 |
| celegans | chromosome:IV:15488815:15488931:-1 | intergenic |
block5172 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.077 | no | no | 0.26/0.26 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 5 | 5arm | 1 | nd | 0.21 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------AGUUUAA------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------TAGTTTAACTTTGAGTTTG------------------------------------------------------- | 19 | 1 | |
| celegans | gcttttctaaTAGTTTAACTTTGAGTTTGaaattttaaataacttaattttaatcttaaaaatattttcactcttccagaagcc | ||
| ************************************************************************************ | |||
| celegans | ((((((..((.(((.((..((((((.((((((((...........)))))))).))))))..)).....))).))..)))))). | 0.900 -10.50 |
| celegans | chromosome:IV:17160536:17160619:-1 | intergenic ## {SimpF: WRM0632bD12 -1 fosmid,WRM0619bH06 -1 fosmid,WRM0639dA04 -1 fosmid} |
block5202 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.370 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 2 | 5arm | 1 | nd | 0.11 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------CGAAAAA------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------TCGAAAAAATTGGAATTG-------------------------------------------------- | 18 | 1 | |
| celegans | gcttttttcTCGAAAAAATTGGAATTGaatagagctttcaattctctcccaaagtgcatttcgacatctttcctggc | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y38C1AA.3b Y38C1AA.3 pnc-1 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y38C1AA.3a Y38C1AA.3 pnc-1 | ||
| celegans | .........((((((..((((((((((((.......))))))))).......)))...))))))............. | 0.560 -10.91 |
| celegans | chromosome:IV:187372:187448:1 | Same_strand|Intronic_coding|Y38C1AA.3a|Y38C1AA.3 ## Same_strand|Intronic_non-coding|Y38C1AA.3b|Y38C1AA.3 ## Y38C1AA.3|protein_coding|pnc-1|Y38C1AA.3 [Source:RefSeq_peptide;Acc:NP_499876] |
block5286 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.363 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 1 | 3arm | 3 | nd | 0.22 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------UUUUGAG------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------GTTTTGAGTTTTTTGTTT-------------------- | 18 | 1 | |
| celegans | caccacgtgttatgaaaaataaaaaatttttgcttgtcaGTTTTGAGTTTTTTGTTTcaatatttgactaacggatg | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y54G2A.37 Y54G2A.37 Y54G2A.37 | ||
| --------------------------------------------------------------------------------------- | Y54G2A.13 Y54G2A.13 Y54G2A.13 | ||
| celegans | ..((....((((....(((((((((((((..(((....)))...))))))))))))).......))))....))... | 0.890 -11.80 |
| celegans | chromosome:IV:2817367:2817443:1 | Same_strand|Intronic_coding|Y54G2A.37|Y54G2A.37 ## Opposite_strand|Intronic_coding|Y54G2A.13|Y54G2A.13 ## Y54G2A.37|protein_coding|Y54G2A.37|Y54G2A.37 [Source:RefSeq_peptide;Acc:NP_001023502] ## Y54G2A.13|protein_coding|Y54G2A.13|Y54G2A.13 [Source:RefSeq_peptide;Acc:NP_500256] ## {SimpF: WRM0618dD04 1 fosmid,CEOP4650 1 Operon} |
block5347 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.740 | no | no | 0.47/0.47 | 30/30/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 1 | 5arm | 1 | nd | 0.27 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------GAAUCAA------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------GGAATCAAGGGAAGACGGCAAGGAAGTTAT-------------------------------------------------------------- | 30 | 1 | |
| celegans | aaaaagtgaaaagagaacatgaattattGGAATCAAGGGAAGACGGCAAGGAAGTTATgttcgcgtttatgattcgcctcttactaaaacttgctttcagcataactgtttggcattttt | ||
| ************************************************************************************************************************ | |||
| celegans | .(((((((......(((((.......((((((.((((..((((.(((...((.((((((........))))))))))))))).......)))).))))))......)))))..))))))) | 0.880 -20.32 |
| celegans | chromosome:IV:4641203:4641322:1 | intergenic ## {SimpF: WRM0636bA05 1 fosmid,WRM0615bH02 1 fosmid,WRM0616dA11 1 fosmid,WRM0637aB09 1 fosmid,WRM0637cD05 1 fosmid,WRM0629aB05 1 fosmid} |
block5451 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.908 | no | no | 0.16/0.16 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 2 | 3arm | 2 | nd | 0.24 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------UUUAUUC------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------GTTTATTCAAAATTAAAGTTATCTT------------------------- | 25 | 1 | |
| celegans | gcgacatctgtttaagtttcctgagaagctcatatttttaaaaattttggtaatttaacataatcaacaaGTTTATTCAAAATTAAAGTTATCTTctgtaaaggttgttggatgattgta | ||
| ************************************************************************************************************************ | |||
| celegans | ((((((((((.........(((.(((((.....(((((....((((((((.(((((............)))))...)))))))))))))...)))))....)))....)))))).)))). | 0.450 -14.82 |
| celegans | chromosome:IV:5384089:5384208:1 | intergenic ## {SimpF: WRM0621dF11 1 fosmid,WRM0621cG07 1 fosmid,WRM0612cF05 1 fosmid,WRM0612dE10 1 fosmid,WRM061aH06 1 fosmid,WRM066cH08 1 fosmid,WRM0636bF04 1 fosmid,WRM0614bB03 1 fosmid} |
block5452 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.397 | no | no | 0.36/0.36 | 25/25/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | 12 | 5arm | 2 | nd | 0.24 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------UAAAGGU------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------GTAAAGGTTGTTGGATGATTGTATG------------------------------------------------------------- | 25 | 2 | |
| celegans | tcttctGTAAAGGTTGTTGGATGATTGTATGagtccgagaagcacttgagccactaggaacgtgctaggaatgcagcgggtttgcattgaag | ||
| ******************************************************************************************** | |||
| celegans | .(((((((.(((.((((((.((..(((((((..(((.((..((......))..)).))).))))).))..)).)))))).))))))..)))) | 0.990 -22.30 |
| celegans | chromosome:IV:5384180:5384271:1 | intergenic ## {SimpF: WRM0621dF11 1 fosmid,WRM0621cG07 1 fosmid,WRM0612cF05 1 fosmid,WRM0612dE10 1 fosmid,WRM061aH06 1 fosmid,WRM066cH08 1 fosmid,WRM0636bF04 1 fosmid,WRM0614bB03 1 fosmid} |
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