miR-Intess: classification

other hairpins

block5157 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.172	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	7	27	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------CGUUGCG------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------------------TCGTTGCGCCCAGGGTATC-------	19	1
celegans	gaaggatacgcgagggatggtctgaaattgtaggttaaaataaaagtcggtttcacaatttcggtaaaactgaaatatgtttttttctaaTCGTTGCGCCCAGGGTATCagcttcg
	********************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------------------------------------------------------------------------------	Y116A8C.3 Y116A8C.3 Y116A8C.3
celegans	(((((((((....(((.((...(((.....((((..((((((....(((((((.((.......)).)))))))....))))))..)))).)))...)))))...)))))..)))).	0.650 -24.60

celegans

chromosome:IV:16916839:16916954:-1

Opposite_strand|Intronic_coding|Y116A8C.3|Y116A8C.3 ## Y116A8C.3|protein_coding|Y116A8C.3|Y116A8C.3 [Source:RefSeq_peptide;Acc:NP_503003] ## {SimpF: WRM0621dF01 -1 fosmid}

block5713 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.945	no	no	0.35/0.35	26/26/0.00	0.0	0.0	3	0	1	0	13	2	3arm	1	15	0.31	3	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------GAAUUUU-------------------------------	3	novel
		len	cloning frequencies
			CE1
	------------------------------------------------AGAATTTTCAGCCAAATCTATCGAAC-------------	26	3
celegans	ctatgttgatgcggtatgtttttgtttttgaaaaaaaattatattctaAGAATTTTCAGCCAAATCTATCGAACagttacaagatgg
	***************************************************************************************
	>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	R09E10.7 R09E10.7 pqn-55
celegans	((((.(((.(((((((....((((...(((((((....(((.....)))...))))))).))))..)))))..))....))).))))	0.620 -9.10

celegans

chromosome:IV:10288907:10288993:1

Same_strand|Boundary_coding|R09E10.7|R09E10.7 ## R09E10.7|protein_coding|pqn-55|The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] ## {SimpF: R09E10.7 1 Expression_profile,WRM062cC04 1 fosmid,WRM0618cB03 1 fosmid,WRM0641cG10 1 fosmid}

block5805 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.051	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	17	6	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	------------------CUUGAAG---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------GCTTGAAGTTTCCGACATTCCAATT----------------------------------------------------------------	25	1
celegans	tcacaacaatttttgtcGCTTGAAGTTTCCGACATTCCAATTgatcgataagattttgacgaatccgagtagggaataaatcgatttttgacaaaagtgattgtgg
	**********************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................................................	C36H8.1 C36H8.1 C36H8.1
celegans	.(((((..((((((((((.((((.((((((...((((..(((..((((.......))))..)))..)))).))))))...))))....))))))))))..))))).	0.710 -25.40

celegans

chromosome:IV:12744674:12744779:1

Opposite_strand|Boundary_non-coding|C36H8.1|C36H8.1 ## C36H8.1|protein_coding|C36H8.1|C36H8.1 [Source:RefSeq_peptide;Acc:NP_502434] ## {SimpF: WRM063bG11 1 fosmid,WRM0635bD10 1 fosmid,WRM0620dB12 1 fosmid,WRM0627aC07 1 fosmid,WRM069bD03 1 fosmid,WRM0639bE02 1 fosmid,C36H8.1 1 Expression_profile,WRM067bF06 1 fosmid,WRM061aB09 1 fosmid,WRM0630bD03 1 fosmid}

block5842 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.842	no	no	0.33/0.35	18/20/0.50	0.0	1.0	2	0	1	0	10	5	3arm	2	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------AUUGGAU----------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------TATTGGATTTAGATCTGGAG----------	20	1
	--------------------------------------------------TATTGGATTTAGATCTGG------------	18	1
celegans	acgactgtttcattgaaatcttaaaagcatcgtgtttttacttatggcatTATTGGATTTAGATCTGGAGagaacattgt
	********************************************************************************
celegans	((((.(((((..((...(((.((((..((..(((((.........)))))...))..)))))))...))..)))))))))	0.410 -8.10

celegans

chromosome:IV:13662831:13662910:1

intergenic ## {SimpF: WRM0640aB11 1 fosmid,WRM065cG01 1 fosmid,WRM0636aH06 1 fosmid,WRM0634dB07 1 fosmid,WRM0633dA12 1 fosmid}

block6149 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	16	7	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------CUGAGUA------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TCTGAGTAGCAATTTTTG--------------------------------------------------------------------------	18	1
celegans	tttatagtttatatgaTCTGAGTAGCAATTTTTGaaaggaacaacaacacaaaaacttcaaatttcttgcaaatatgtgaattttacgatgtttataaactttttaaa
	************************************************************************************************************
celegans	.(((.((((((((..(((((((..(((...((((.((((((.....................)))))).))))..)))....)))).)))...))))))))...))).	0.670 -12.80

celegans

chromosome:IV:16032955:16033062:1

intergenic ## {SimpF: WRM0613dE04 1 fosmid}

block6157 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.32/0.38	19/21/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	5 9	20 14	5arm 5arm	2 2	nd nd	0.37 0.33	4 3	2	1	na	na

		reads	miRBase family seed
seed	------UGAUGAC------------------------------------------------------------------------------	1	novel
seed	----------GACAAUG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----TTGATGACAATGGTTTATG-------------------------------------------------------------------	19	1
	---------TGACAATGGTTTATGAACGGT-------------------------------------------------------------	21	1
celegans	gaaaaTTGATGACAATGGTTTATGAACGGTtatttttccaaaatgttattttgggaatttatagtttaaaacgcttctctgtagaattttt
	*******************************************************************************************
celegans	(((((((....(((..(((((.(((((...((..((((((((((...))))))))))..))..))))).)).)))....)))..)))))))	0.650 -15.00

celegans

chromosome:IV:16099952:16100042:1

intergenic

block7322 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.619	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	24	10	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------CUUCACA----------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------TCTTCACAAATAGCCTTC------------------------	18	1
celegans	tgggataacggagtgtcgttcgatgttttcttttgtgcgttgaaataaatttataagtttagaatTCTTCACAAATAGCCTTCagaaagtgcttcagttgtaaatcg
	***********************************************************************************************************
celegans	.((.(((((((((((...(((((.(((....((((((....(((.((((((....))))))...)))..)))))).)))..)).)))..)))))).)))))...)).	0.870 -17.90

celegans

chromosome:V:12400862:12400968:1

intergenic ## {SimpF: WRM069bE06 1 fosmid,WRM0627aF01 1 fosmid,WRM0623bE06 1 fosmid,WRM069cA03 1 fosmid,WRM0636aG02 1 fosmid,WRM0614cG10 1 fosmid,WRM0623bC10 1 fosmid}

block7625 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.125	no	no	0.54/0.54	26/26/0.00	0.0	0.0	3	0	1	0	13	8	5arm	1	nd	0.31	3	3	1	na	na

		reads	miRBase family seed
seed	--------------CGGUUUG----------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-------------GCGGTTTGAGTGGCAGGTGCGAAATT----------------------------------------------------------	26	3
celegans	tcggtgcatgaacGCGGTTTGAGTGGCAGGTGCGAAATTtagctccctggctgggggtgggaaatttagctccacatactactgaaagtcgtccgaa
	*************************************************************************************************
	-----------------------------------------------------------------------------------------------------------	ZK402.3 ZK402.3 ZK402.3
celegans	((((...((((...((((...((((...((.((.((((((.((((((.....))))))...)))))).)).))...))))))))....)))))))).	0.970 -31.70

celegans

chromosome:X:1402595:1402691:-1

Opposite_strand|Intronic_coding|ZK402.3|ZK402.3 ## ZK402.3|protein_coding|ZK402.3|ZK402.3 [Source:RefSeq_peptide;Acc:NP_508262] ## {SimpF: WRM0625bG09 -1 fosmid,WRM0633aC09 -1 fosmid,WRM0617aH09 -1 fosmid,WRM064cE08 -1 fosmid,WRM0626cF12 -1 fosmid,ZK402.3 -1 Expression_profile,WRM0629aD05 -1 fosmid,WRM0635cC09 -1 fosmid,WRM0636bA02 -1 fosmid,WRM063cH01 -1 fosmid,WRM0639aA01 -1 fosmid}

block8314 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.045	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	16	11	5arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------AAAAAAA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------CAAAAAAAAACAGTTTCAA-----------------------------------------------------------------	19	1
celegans	gaactatgtgtcacaaCAAAAAAAAACAGTTTCAAaaattttgtgtaaaaattaaacaacataaaagaagcggtttttgtgatcagatcatcatcagtta
	****************************************************************************************************
celegans	.(((((((((((....((...((((((.(((((.....((((((((............))))))))))))).)))))).))....)).)).))).)))).	0.910 -16.20

celegans

chromosome:X:6087837:6087936:1

intergenic ## {Repeats: dust 31970 31978 0 class=dust} ## {SimpF: WRM0613aH05 1 fosmid,WRM0617aB05 1 fosmid,WRM0635cH04 1 fosmid,WRM069cC11 1 fosmid,WRM0637dA08 1 fosmid,WRM0621cD06 1 fosmid,WRM0621aE04 1 fosmid,WRM069dE04 1 fosmid,C45B2.1 1 Expression_profile,WRM0615aD11 1 fosmid,WRM0614cG03 1 fosmid,WRM0617aC05 1 fosmid}

block8528 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.275	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	17	8	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------CUUUGAU---------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------TCTTTGATTGAGTTTTTT-----------------	18	1
celegans	ctactttccacagaatagtgtgaatataaatgccgaatcatttttctggagtttccaacttgactttcacttccgaTCTTTGATTGAGTTTTTTctacattatttcgagta
	***************************************************************************************************************
celegans	.(((((......((((((((((((...((((....(((((....((.(((((................))))).))....)))))..)))).))).))))))))).)))))	0.880 -16.49