miR-Intess: classification

other hairpins

novel_lenNOK_nonpairedHIGH_bulgeHIGH (22 loci)

block955 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.101	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	8	5	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------UUUUUUU------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------CTTTTTTTTCGAAGCATT--------	18	1
celegans	cacgagatttcgaaaaattttgaagaattttgaaactttttCTTTTTTTTCGAAGCATTtttagtgc
	*******************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	W02D3.3 W02D3.3 mec-6
celegans	(((((((((((((((((....((((((.........))))))...))))))))))...)))).))).	0.780 -11.60

celegans

chromosome:I:6727545:6727611:1

Same_strand|Intronic_coding|W02D3.3|W02D3.3 ## W02D3.3|protein_coding|mec-6|mec-6 is homologous to the human PARAOXONASE 1 gene (PON1, OMIM:168820), which in some allelic forms is associated with susceptibility to coronary artery disease. MEC-6 protein interacts physically with the MEC-4 degenerin ion channel, is colocalized with it in vivo, and is required for MEC-4 punctate expression along touch-receptor neural processes. [Source: WormBase] ## {Repeats: dust 53620 53629 0 class=dust} ## {SimpF: WRM0625bB07 1 fosmid,WRM0632cE11 1 fosmid,WRM068bG01 1 fosmid,WRM0612cG05 1 fosmid,WRM0610bD11 1 fosmid}

block1078 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.244	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	20	0	5arm	2	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------UAUGCCA------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------GTATGCCATCTTGAGTGAG-------------------------------------------------	19	1
celegans	tccatgtagaagctcttgacGTATGCCATCTTGAGTGAGctgcaaaaatacttattccttcatgttacctatcgagggcgacatcggg
	****************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................	C04F12.12 C04F12.12 C04F12.12
celegans	.((((((....((((((((.(((...(((...(((((((...........)))))))....))).)))...)))))))).)))).)).	0.890 -21.30

celegans

chromosome:I:9694997:9695084:1

Opposite_strand|Boundary_non-coding|C04F12.12|C04F12.12 ## C04F12.12|protein_coding|C04F12.12| ## {SimpF: WRM0630dC04 1 fosmid,WRM0612dG10 1 fosmid,WRM0637bB03 1 fosmid,WRM064dE10 1 fosmid,WRM0619bF10 1 fosmid}

block2186 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.036	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	11	12	5arm	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	------------AUUUUUA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------GATTTTTAGACCAAAAATT-------------------------------------------------------------	19	1
celegans	gaaaaaatattGATTTTTAGACCAAAAATTccgattttttagcttaaaaatcattgaaaaattggaaaattcggcgaaaatatactttttc
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	Y110A2AL.13 Y110A2AL.13 Y110A2AL.13
celegans	((((((.(((..((((((...((.((..((((((((((((((...........))))))))))))))..)).)).))))))))).))))))	0.970 -15.30

celegans

chromosome:II:2887368:2887458:1

Opposite_strand|Intronic_coding|Y110A2AL.13|Y110A2AL.13 ## Y110A2AL.13|protein_coding|Y110A2AL.13|Y110A2AL.13 [Source:RefSeq_peptide;Acc:NP_494393] ## {SimpF: CEOP2072 -1 Operon,Y110A2A_1898.C 1 Expression_profile}

block2476 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.154	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	16	4	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------AGAAAAA---------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------GAGAAAAACCAAAAGAAAC----------------	19	1
celegans	aacacgatcttctttacttctttgcaaattttcaaccatttccatcccatttttctcaaacatgaaacgcggtGAGAAAAACCAAAAGAAACacggagataaatgttt
	************************************************************************************************************
celegans	((((..((((((.....((((((..........................(((((((((....((.....)).)))))))))...))))))....))))))...)))).	0.500 -14.45

celegans

chromosome:II:8686515:8686622:1

intergenic ## {SimpF: WRM062aH05 1 fosmid,WRM0629cC02 1 fosmid,WRM0610bD12 1 fosmid,WRM0611bE04 1 fosmid,WRM0639bA06 1 fosmid,WRM0623bA02 1 fosmid}

block2747 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.208	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	13	1	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UACACAA------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------GTACACAACGGACAGTGCC-------------	19	1
celegans	agaaacaaatcgtacatcaaagttttgtgcatcgtagctGTACACAACGGACAGTGCCaaattactttctt
	***********************************************************************
	---------------------------------------------------------------------------------	Y53F4B.5 Y53F4B.5 Y53F4B.5
celegans	(((((..(((.((((.((...(((.((((((.......)))))).))).))..))))...)))..))))).	0.900 -11.80

celegans

chromosome:II:14982856:14982926:1

Opposite_strand|Intronic_coding|Y53F4B.5|Y53F4B.5 ## Y53F4B.5|protein_coding|Y53F4B.5|Y53F4B.5 [Source:RefSeq_peptide;Acc:NP_497090] ## {SimpF: Y53F4B.H 1 Expression_profile}

block4242 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.327	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	6	22	5arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-------ACACAGU--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GACACAGTTCAATGTTGCT---------------------------------------------------------------------------	19	1
celegans	gccatgGACACAGTTCAATGTTGCTattcacgtgaaaaggtaatcttgtttttttaaagtttccctaactcgcatttgtttgattgtgctgtgaacagga
	****************************************************************************************************
celegans	.((.((..((((((.((((...((.......((((..(((.((.(((.........))).)).)))...))))....))...)))).))))))..)))).	0.630 -20.70

celegans

chromosome:IV:5381075:5381174:-1

intergenic ## {SimpF: WRM0621dF11 -1 fosmid,WRM0612dE10 -1 fosmid,WRM066cH08 -1 fosmid,WRM0612cF05 -1 fosmid,WRM0636bF04 -1 fosmid,WRM0614bB03 -1 fosmid,WRM061aH06 -1 fosmid,WRM0621cG07 -1 fosmid}

block4708 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.159	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	19	15	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------UCAGAUG------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------TTCAGATGTTAGATAGGTG-------------------	19	1
celegans	aattaaatttgaatttaatacgttttttctgtttcaataatgcgataatataaaataattatgttctccatagTTCAGATGTTAGATAGGTGaataatttaaattaaattg
	***************************************************************************************************************
celegans	((((.((((((((((...(((...(((..(((((.(((.(((.((.(((((((.....))))))).))))).))).)))))..)))...)))...)))))))))).)))).	0.990 -15.80

celegans

chromosome:IV:13764296:13764406:-1

intergenic ## {SimpF: WRM0623aE09 -1 fosmid,WRM0618dC07 -1 fosmid,WRM0628aF05 -1 fosmid}

block4746 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	22	6	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUCGAGU--------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------TATCGAGTTTCTATACTT----------------------	18	1
celegans	tatatgaactacggttttatagtgtattgaaaagttgaaaattataggaatatgatTATCGAGTTTCTATACTTattgagaataattagaaatgta
	************************************************************************************************
celegans	(((((...(((..(((((.....((((.((((..((((.(((((((....))))))).)))).)))).))))......)))))...)))..)))))	0.710 -16.40

celegans

chromosome:IV:14098087:14098182:-1

intergenic ## {SimpF: WRM0639bE10 -1 fosmid,WRM0629cF09 -1 fosmid,WRM0635dF03 -1 fosmid,F52B11.4 -1 Expression_profile}

block4751 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.188	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	11	27	3arm	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------AUAUGAG---------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------------------------TATATGAGAAGAGCGGTC-----------	18	1
celegans	caagaaacagtcggattcttaaactaaaaattgaaagtttcaatgtctttttagaaggtattggagttttactctactgtTATATGAGAAGAGCGGTCtatatttcttg
	*************************************************************************************************************
celegans	(((((((.(((((..(((((((((.......(((((.(((((((..((((...))))..)))))))))))).......)))...))))))...))).))...)))))))	0.570 -21.24

celegans

chromosome:IV:14176709:14176817:-1

intergenic ## {SimpF: WRM0618cE02 -1 fosmid,WRM0626aC09 -1 fosmid,WRM0626cF11 -1 fosmid,yk364e1 -1 RNAi,R05A10.3 -1 Expression_profile}

block5057 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.32/0.38	19/21/0.50	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	5 9	20 14	5arm 5arm	2 2	nd nd	0.37 0.33	4 3	2	1	na	na

		reads	miRBase family seed
seed	------UGAUGAC------------------------------------------------------------------------------	1	novel
seed	----------GACAAUG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-----TTGATGACAATGGTTTATG-------------------------------------------------------------------	19	1
	---------TGACAATGGTTTATGAACGGT-------------------------------------------------------------	21	1
celegans	gaaaaTTGATGACAATGGTTTATGAACGGTtatttttccaaaatgttattttgggaatttatagtttaaaacgcttctctgtagaattttt
	*******************************************************************************************
celegans	(((((((....(((..(((((.(((((...((..((((((((((...))))))))))..))..))))).)).)))....)))..)))))))	0.650 -15.00