miR-Intess: classification

other hairpins

novel_lenNOK_shortStem_nonpairedHIGH (12 loci)

block3889 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.052	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	2	20	5arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---AUGAUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GATGATGGTGGTGGTGGCT----------------------------------------------------------------	19	1
celegans	tgGATGATGGTGGTGGTGGCTgcaatttttctagttgaaaaaaaacttttcctagttaaaaattggccgtttccagcttaattta
	*************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------------------------------------------	C24H11.7 C24H11.7 gbf-1
celegans	(((((...(((((..(((((..((((((((((((..(((((.....)))))))))..)))))))))))))..))).))..)))))	0.970 -18.40

celegans

chromosome:III:11754332:11754416:1

block4230 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.684	no	no	0.44/0.44	18/18/0.00	0.0	0.0	2	0	1	0	2	8	3arm	1	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------UGCGUAG------------	2	miR-242
		len	cloning frequencies
			CE1
	-------------------------------------GTGCGTAGAATGAGGTTT--	18	2
celegans	gtgacatcattcgactccgtttttgatcacagtaaccGTGCGTAGAATGAGGTTTgc
	*********************************************************
	<<<<<<<<<<<<.......................................................	ZK354.3 ZK354.3 ZK354.3
celegans	..(((.((((((.((...(((.(((....))).))).....)).)))))).)))...	0.610 -8.50

celegans

chromosome:IV:5310173:5310229:-1

intergenic ## {SimpF: ZK354.3 -1 Expression_profile,WRM0631dA01 -1 fosmid}

block4674 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.447	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	0	3	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------UGGUUUG-----------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------CTGGTTTGTGACGCAGAGC	19	1
celegans	gctttcgagcaagaaaatttgaatttcagCTGGTTTGTGACGCAGAGC
	************************************************
celegans	(((((((.(((((.....(((.....)))....)))))..)).)))))	0.990 -8.70

celegans

chromosome:IV:13208100:13208147:-1

intergenic ## {SimpF: WRM0613dC12 -1 fosmid,WRM0620dC10 -1 fosmid,WRM0613cG01 -1 fosmid,WRM0610cE07 -1 fosmid,WRM068aH12 -1 fosmid}

block4799 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.256	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	1	9	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UAGAAUC------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------TTAGAATCTAGAGTTGAGC-	19	1
celegans	gtttcacctacaaatctaatttatgaagttctcagaattccgaTTAGAATCTAGAGTTGAGCa
	***************************************************************
celegans	((((.(((((....(((((((...((.((((...)))))).)))))))...))).)).)))).	1.000 -9.30

celegans

chromosome:IV:14535835:14535897:-1

intergenic ## {SimpF: WRM0616dD10 -1 fosmid,WRM0616aA10 -1 fosmid,WRM0638cE12 -1 fosmid,WRM0613aE08 -1 fosmid}

block5404 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.792	no	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	2	19	5arm	3	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---UAAGCCG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTAAGCCGACTTGTCCGCCATCGTTG------------------------------------------------------------------------	26	1
celegans	atGTAAGCCGACTTGTCCGCCATCGTTGtctttcgtttgaggttgttcagagaaacttgctcagaaaactgataaactgacgatttctgtcccattatat
	****************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................................................	C24D10.8 C24D10.8 nspd-6
celegans	((((((...(((..((.((.((...(((((.....((((((...(((......)))...)))))).....)))))..)).))))....)))...))))))	0.710 -16.80

celegans

chromosome:IV:5165694:5165793:1

Opposite_strand|Boundary_non-coding|C24D10.8|C24D10.8 ## C24D10.8|protein_coding|nspd-6|Nematode Specific Peptide family, group D family member (nspd-6) [Source:RefSeq_peptide;Acc:NP_001076664] ## {SimpF: WRM0633dC11 1 fosmid,C24D10.8 1 Expression_profile}

block5541 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.273	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	0	36	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-CGAGGUC-------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TCGAGGTCTGGCTGAAACT--------------------------------------------------------------------------------------------	19	1
celegans	TCGAGGTCTGGCTGAAACTaaatttcgaattttatattggaataagtttatttttgaaaatggaaattttaattcaaatgtgacatcgtgtatagtctaagcctacattgg
	***************************************************************************************************************
celegans	.(((.((..((((...((((.((..(((...(((((((.((((.((...((((((......)))))).)).)))).)))))))..))).)).))))...)))).)).))).	0.930 -20.20

celegans

chromosome:IV:6769046:6769156:1

intergenic ## {SimpF: WRM0610aG01 1 fosmid,WRM0632aG04 1 fosmid,WRM069aB01 1 fosmid,WRM0632cH07 1 fosmid}

block6071 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.39/0.39	18/18/0.00	0.0	0.0	2	0	1	0	0	13	3arm	1	nd	0.35	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UCUAAUC----------	2	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------TTCTAATCGGTCTCAATC	18	2
celegans	attgtactgtttcaaattgttgttaagacaactgtttcttcttaccattcaaTTCTAATCGGTCTCAATC
	**********************************************************************
celegans	((((.((((.((..(((((.((.(((((...........))))).))..)))))..)).))))..)))).	1.000 -9.50

celegans

chromosome:IV:15495652:15495721:1

intergenic ## {SimpF: WRM0612dB03 1 fosmid}

block7071 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.631	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	2	14	5arm	1	nd	0.44	3	1	1	na	na

		reads	miRBase family seed
seed	---AGAUAAC----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GAGATAACCAAGAATAAA------------------------------------------------------------	18	1
celegans	acGAGATAACCAAGAATAAAgtattgaagcatcgtgttcggaactcaatcgatcaaacaataaattattgattattgcga
	********************************************************************************
celegans	.((..((((.((...((((..(((((....((((...............))))....)))))..)))))).))))..)).	0.840 -9.06

celegans

chromosome:V:2083781:2083860:1

intergenic ## {SimpF: yk278f5 1 RNAi}

block7185 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.291	no	no	0.28/0.28	25/25/0.00	0.0	0.0	1	0	1	0	1	26	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AUAGAAA------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------GATAGAAATTTGAATAATGCTCAAC-	25	1
celegans	gttgaaattacagtaagcctatcactaacctcacatgctcagtttgactcgaaaagtcgcacgtacaaaaaacatgaactagGATAGAAATTTGAATAATGCTCAACa
	************************************************************************************************************
celegans	(((((.((((...((((.(((((.(((......((((.....((((((.(((....)))...)).))))...))))...))))))))...))))..))))..))))).	0.650 -16.10

celegans

chromosome:V:7731189:7731296:1

intergenic ## {SimpF: WRM061bB01 1 fosmid,WRM0636cH11 1 fosmid,WRM0632bE05 1 fosmid,WRM0633cE08 1 fosmid,WRM0624aH06 1 fosmid,WRM0637aH08 1 fosmid,WRM0611aE12 1 fosmid,WRM0636dD02 1 fosmid}

novel_loopOverlap_nonpairedHIGH (11 loci)

block161 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.040	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	12	-3	3arm_loop	2	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------CUGAUAG--------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------ACTGATAGTGAGTGATGGATCT------------	22	1
celegans	tcggtggagcaccatgatccggccagttagtccACTGATAGTGAGTGATGGATCTtgttttaccggc
	*******************************************************************
celegans	(((((((((((....((((((..((.((((((....)))..))).)).)))))).))))))))))).	0.980 -23.30