miR-Intess: classification

other hairpins

block6397 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.094	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	3	22	5arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	----UGAAAUG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---TTGAAATGAATAAAATAC--------------------------------------------------------------------	18	1
celegans	tttTTGAAATGAATAAAATACtaggtaactgttctttttcgattattaatcgactagaaagacaattgtttgtttcattcgtcaaaagt
	*****************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	R05D8.12 R05D8.12 srx-27
celegans	(((((((((((((..(((((....((.....((((...(((((.....)))))..))))..))...)))))..))))))..))))))).	0.620 -15.70

celegans

chromosome:V:2753468:2753556:-1

Same_strand|Intronic_non-coding|R05D8.12|R05D8.12 ## R05D8.12|pseudogene|srx-27| ## {SimpF: WRM0613dC03 -1 fosmid,WRM0629cH06 -1 fosmid,WRM0640bA07 -1 fosmid,WRM0629cA09 -1 fosmid,WRM0613bF03 -1 fosmid,WRM0637aA05 -1 fosmid,WRM0629bC09 -1 fosmid}

block6734 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.353	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	0	27	5arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	-UUUUUGA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	TTTTTTGAGTAAAATATC-----------------------------------------------------------------------------	18	1
celegans	TTTTTTGAGTAAAATATCgaattttttgtattaattctgtaaattttataatttgcaactattttggcgtattctgcttgtttttatcagcgaat
	***********************************************************************************************
celegans	(((.((((..((((((..((((....(((...(((..((((((((....))))))))...)))...))).))))....))))))..)))).))).	0.570 -12.30

celegans

chromosome:V:12728269:12728363:-1

intergenic ## {Repeats: dust 56557 56575 0 class=dust} ## {SimpF: WRM068dG12 -1 fosmid,R11D1.9 -1 Expression_profile,WRM0640cD05 -1 fosmid,WRM062cC08 -1 fosmid,WRM0640bE06 -1 fosmid,WRM0627cA12 -1 fosmid}

block7467 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	0	11	3arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------CACAUGC-----------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------ACACATGCAACGTCTCGGC	19	1
celegans	gcccgcgtaagcatcatagtttctgacattaataaactattttttcagACACATGCAACGTCTCGGC
	*******************************************************************
celegans	(((.((((..((((....((.(((((....((((...))))...))))).)))))).))))...)))	0.780 -12.90

celegans

chromosome:V:17069622:17069688:1

intergenic ## {SimpF: WRM0615aG02 1 fosmid,WRM0636dH06 1 fosmid,WRM0619bF01 1 fosmid,WRM0614cA06 1 fosmid,WRM0612aF04 1 fosmid,WRM0635dG10 1 fosmid,WRM0641cE12 1 fosmid,WRM0621aD01 1 fosmid,WRM067aD09 1 fosmid,WRM0629cH07 1 fosmid,WRM0629bB03 1 fosmid}

block8653 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	2	9	3arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------GAUAUGU------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	------------------------------------------------TGATATGTTGTTGATGCC--	18	1
celegans	gcgagttaacaacttgtttgttacagaattggtgaaatacgatgctgaTGATATGTTGTTGATGCCgt
	********************************************************************
celegans	(((.(((((((((.....((((((((.((((........)))).))).))))).)))))))))..)))	1.000 -18.50

celegans

chromosome:X:15806571:15806638:1

intergenic

block4411 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.152	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	1	12	3arm	1	nd	0.21	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CGAUGAU------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------GCGATGATCTTCTGTGATT-	19	1
celegans	agtcttcagtatgggtcaatctctgatctgcaactgaatatgatgagttcggGCGATGATCTTCTGTGATTa
	************************************************************************
celegans	((((..(((...(((((.((((((((.((.((........))...)).))))).)))))))).))).)))).	0.880 -16.10

celegans

chromosome:IV:8428649:8428720:-1

intergenic ## {SimpF: T26A8.2 -1 Expression_profile,WRM0624dG01 -1 fosmid}

novel_shortStem_nonpairedHIGH (15 loci)

block467 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.804	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	4	21	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----AGACUAA-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----CAGACTAACACCAAGGATACC------------------------------------------------------------------	21	1
celegans	tcatCAGACTAACACCAAGGATACCagtttgaatttgagattttgaaaccattagtccgtctcaatgttgtctgcgtgtggatcgatttga
	*******************************************************************************************
	........................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	F45H11.3b F45H11.3 F45H11.3
celegans	(((...((...((((...(((((.((........(((((((.((((.....))))...))))))))).)))))..))))...))....)))	0.660 -14.80

celegans

chromosome:I:10380699:10380789:-1

intergenic ## {SimpF: WRM0626cG06 -1 fosmid,WRM0635aE10 -1 fosmid,WRM0613aG07 -1 fosmid,WRM0616bH02 -1 fosmid,WRM0629bC06 -1 fosmid,WRM0634bH08 -1 fosmid,CEOP1600 -1 Operon,WRM0621cG01 -1 fosmid}

block1499 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.204	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	2	9	5arm	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---UUGACGA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--GTTGACGATAGTCTTGATGATC--------------------------------------------------	22	1
celegans	taGTTGACGATAGTCTTGATGATCacactggtcctttggccaggttttgtttcacttaagcggtcttttaaact
	**************************************************************************
celegans	.((((...(((...((((((((.((..((((((....))))))....))..))).)))))..))).....))))	0.920 -15.20

celegans

chromosome:I:15071324:15071397:1

intergenic ## {SimpF: WRM0640bG08 1 fosmid}

block1551 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.503	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	1	8	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--CCAUACG----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-TCCATACGGTCATTTGAGTCT---------------------------------------------	21	1
celegans	cTCCATACGGTCATTTGAGTCTcaaccttgccatcgaggagggatacaataaaacttggttcagagg
	*******************************************************************
celegans	(((...(((((...(((.(((((..(((((....))))).))))).)))....)))..))...))).	0.960 -13.40

celegans

chromosome:II:2681486:2681552:-1

intergenic ## {SimpF: WRM0611cD10 -1 fosmid,WRM0620cA11 -1 fosmid,WRM0623cB01 -1 fosmid,WRM0641bB09 -1 fosmid,WRM0627bF12 -1 fosmid,WRM0612dF02 -1 fosmid,WRM0638aF08 -1 fosmid}

block1870 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	4	2	5arm	1	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----UGGACGA--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----CTGGACGAATCGATTGTGTG--------------------------------------------------	20	1
celegans	tcttCTGGACGAATCGATTGTGTGtccaataacaaaactaactgaaagaaaaacaaaagatgtgcagcacagaa
	**************************************************************************
	................................................................>>>>>>>>>>>>>>>>>>>>	R05H5.4 R05H5.4 R05H5.4
	>>>>>>>>>>>>>>>>>>>>>>>.............................................................	R05H5.5 R05H5.5 R05H5.5
celegans	(((.(((.((..(((..((((...((.....................))...))))..))))).)))...))).	0.530 -8.10

celegans

chromosome:II:10199676:10199749:-1

Same_strand|Boundary_non-coding|R05H5.5|R05H5.5 ## R05H5.5|protein_coding|R05H5.5|R05H5.5 [Source:RefSeq_peptide;Acc:NP_496202] ## {SimpF: WRM068dE11 -1 fosmid,WRM0633bD04 -1 fosmid,WRM062aC11 -1 fosmid,WRM0614dE08 -1 fosmid,WRM0626dC11 -1 fosmid,WRM068bA02 -1 fosmid,WRM0624cB12 -1 fosmid}

block3490 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.020	no	no	0.45/0.45	22/22/1.00	0.0	0.0	4	0	1	0	4	0	5arm	1	nd	0.32	3	4	1	na	na

		reads	miRBase family seed
seed	-----AAGUAGU------------------------------------------------	4	miR-252
		len	cloning frequencies
			CE1
	----AAAGTAGTTAGAGTGATGGGGG----------------------------------	22	4
celegans	atttAAAGTAGTTAGAGTGATGGGGGgaaactccagtgataggagagcaaatactataaa
	************************************************************
celegans	.((((.(((((((...((.((.((((....)))).)).)).....)))...)))).))))	0.880 -11.40