other hairpins
block6451 [novel_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.427 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 29 | 3 | 5arm | 25 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------AAAUAUA--------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------------------ | 23 | 1 | |
| celegans | caccaaatatagtgactctgaccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaaatagtgactctggccgttcaccaagtatagtgactctggccgttcaccaaatatagtg | ||
| ********************************************************************************************************************** | |||
| celegans | (((........((((...((.(((.((((...((((.((((...((((((.((((........))))...)))))).))))...)))).))))...))).)).))))........))) | 0.690 -22.59 |
| celegans | chromosome:V:5284924:5285041:-1 | intergenic ## {Repeats: trf 101 124 0 class=trf,trf 1716 1739 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid,WRM066dC01 -1 fosmid} |
block6455 [novel_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.202 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 10 | 3 | 5arm | 25 | nd | 0.30 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------AAAUAUA------------------------------------------- | 1 | novel |
| seed | -----------AAAUAUA--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------ | 23 | 1 | |
| ------------------------------------CAAATATAGTGACTCTGGCCGTT---------------------------- | 23 | 1 | |
| celegans | gaccgttcacCAAATATAGTGACTCTGGCCGTTcacCAAATATAGTGACTCTGGCCGTTcaccaaatatagtgactctgaccgttca | ||
| *************************************************************************************** | |||
| celegans | ((.((.(((.....((((((((...((((((.((((........))))...)))))).))))....)))).......))).)).)). | 0.640 -17.80 |
| celegans | chromosome:V:5285352:5285438:-1 | intergenic ## {Repeats: trf 491 514 0 class=trf,trf 2106 2129 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid} |
block6456 [novel_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.202 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 10 | 3 | 5arm | 25 | nd | 0.30 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------AAAUAUA------------------------------------------- | 1 | novel |
| seed | -----------AAAUAUA--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------ | 23 | 1 | |
| ------------------------------------CAAATATAGTGACTCTGGCCGTT---------------------------- | 23 | 1 | |
| celegans | gaccgttcacCAAATATAGTGACTCTGGCCGTTcacCAAATATAGTGACTCTGGCCGTTcaccaaatatagtgactctgaccgttca | ||
| *************************************************************************************** | |||
| celegans | ((.((.(((.....((((((((...((((((.((((........))))...)))))).))))....)))).......))).)).)). | 0.640 -17.80 |
| celegans | chromosome:V:5285352:5285438:-1 | intergenic ## {Repeats: trf 2132 2155 0 class=trf,trf 517 540 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0640dH06 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid} |
block6458 [novel_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 18 | 3arm | 25 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------AAAUAUA------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------CAAATATAGTGACTCTGGCCGTT--------------- | 23 | 1 | |
| celegans | tcaccaaaattagtgactctggccgttcactaaatatagttactctggccgttcaccaagtatagtgactctggccgttcacCAAATATAGTGACTCTGGCCGTTcatcaaaattagtga | ||
| ************************************************************************************************************************ | |||
| celegans | ((((........((((...((((((.((((((.((...((.....((((((.((((........))))...))))))...))...)).))))))...)))))).))))........)))) | 0.710 -28.09 |
| celegans | chromosome:V:5285599:5285718:-1 | intergenic ## {Repeats: trf 725 748 0 class=trf,trf 2340 2363 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM0630dG02 -1 fosmid,WRM068dH05 -1 fosmid} |
block6459 [novel_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 3 | 5arm | 25 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------AAAUAUA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------CAAATATAGTGACTCTGGCCGTT------------------------------------------------------- | 23 | 1 | |
| celegans | gtgactctggccgttcacCAAATATAGTGACTCTGGCCGTTcaccaaaattagtgactctggccgttcactaaatatagttactctggccgttcac | ||
| ************************************************************************************************ | |||
| celegans | ((((...((((((...((...((.((((((...((((((.((((........))))...)))))).)))))).))...)).....)))))).)))) | 0.760 -26.40 |
| celegans | chromosome:V:5285663:5285758:-1 | intergenic ## {Repeats: trf 1 20 0 class=trf,trf 2444 2467 0 class=trf,trf 23 46 0 class=trf,trf 829 852 0 class=trf} ## {SimpF: WRM0611cF03 -1 fosmid,WRM0631aH03 -1 fosmid,WRM0636dH04 -1 fosmid,WRM0637dF09 -1 fosmid,WRM068dH05 -1 fosmid} |
block973 [novel_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | 5 | 3arm | 1 | nd | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------UAACUUG------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------GTAACTTGACGGAAAGGCGTTGT--------------------- | 23 | 1 | |
| celegans | gttagctccattttccgatttgattccattgcttttacctgaaagttagcagtataaaaagtactGTAACTTGACGGAAAGGCGTTGTtggacgcggatgagtcatacg | ||
| ************************************************************************************************************* | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................................................ | T28F4.1.2 T28F4.1 T28F4.1 | ||
| celegans | ((..((((.....((((.......((((.(((((((.((...(((((.(((((((.....))))))))))))...)))))))))....))))..)))).))))...)). | 0.990 -31.40 |
| celegans | chromosome:I:7476905:7477013:1 | intergenic ## {SimpF: WRM0641dH09 1 fosmid,WRM0640aB04 1 fosmid,WRM0613aC12 1 fosmid,WRM0625bA02 1 fosmid,WRM0630dC02 1 fosmid,WRM0614cC12 1 fosmid,WRM0625bA07 1 fosmid,WRM063dH07 1 fosmid,WRM0625dC06 1 fosmid,WRM066aH03 1 fosmid} |
block1996 [novel_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.42/0.42 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 4 | 3arm | 1 | nd | 0.29 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UUUUAUG-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------TTTTTATGGAGCCTGACTAGTTGG---------------- | 24 | 1 | |
| celegans | aggttcaagccccgtctagaggatttaggcgtccagagaagataaattgaattttcaaTTTTTATGGAGCCTGACTAGTTGGaaaataaaatcaccta | ||
| ************************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------<<<< | Y38E10A.21 Y38E10A.21 rgs-4 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>................................................................................ | Y38E10A.t2 Y38E10A.t2 Y38E10A.t2 | ||
| celegans | ((((..........(((((.....((((((.((((........(((((((....)))))))...))))))))))....)))))..........)))). | 0.720 -22.65 |
| celegans | chromosome:II:12669831:12669928:-1 | Opposite_strand|Intronic_coding|Y38E10A.21|Y38E10A.21 ## Y38E10A.21|protein_coding|rgs-4|rgs-4 encodes a regulator of G protein signaling. by homology, RGS-4 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling. loss of rgs-4 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-4 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability. the RGS-4 expression pattern has not yet been reported. [Source: WormBase] ## {SimpF: Y38E10A.V -1 Expression_profile} |
block2514 [novel_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.210 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 16 | 21 | 5arm | 1 | nd | 0.29 | 4 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UUCGCCA--------------------------------------------------------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------GTTCGCCATAAGCATTCGCTT-------------------------------------------------------------------------------- | 21 | 4 | |
| celegans | tactgtagcggaaagtGTTCGCCATAAGCATTCGCTTaataattcgatttctaatcgaaccattcgatcgaaaattataaaatgttatatggaaatgattcatttttgtgttgaagt | ||
| ********************************************************************************************************************* | |||
| celegans | .(((.((((((((((((.((.(((((((((((....((((..(((((.......((((.....))))))))).))))...)))))).)))))....))..))))))).))))).))) | 0.660 -22.41 |
| celegans | chromosome:II:9611291:9611407:1 | intergenic ## {SimpF: WRM066cG05 1 fosmid,WRM0637dB07 1 fosmid} |
block3368 [novel_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.956 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 26 | 5arm | 1 | 6 | 0.25 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------AACAAUG------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------TAACAATGTGATTAAGCCCG------------------------------------------------------------------------------------- | 20 | 1 | |
| celegans | ggatgcgaaTAACAATGTGATTAAGCCCGatcaaccaccgccacagtaaattgaactttttcattgcgataaatatttcttttcggttccttgtatagtttctgttattagttc | ||
| ****************************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | T03F6.6.2 T03F6.6 T03F6.6 | ||
| >>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | T03F6.6.1 T03F6.6 T03F6.6 | ||
| celegans | ((((...(((((((....(((((.((((((...............((((..((((....))))))))...............))))......)).)))))..))))))).)))) | 0.560 -14.21 |
| celegans | chromosome:III:13378293:13378406:-1 | Same_strand|Boundary_coding|T03F6.6.1|T03F6.6 ## T03F6.6|protein_coding|T03F6.6|T03F6.6 [Source:RefSeq_peptide;Acc:NP_499756] |
block3652 [novel_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.680 | no | no | 0.15/0.15 | 20/20/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 8 | 14 | 5arm | 1 | nd | 0.30 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------UUCUAGU----------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------TTTCTAGTTATTTAAAAATC----------------------------------------------------------- | 20 | 3 | |
| celegans | tcgcagaaTTTCTAGTTATTTAAAAATCaaattgttagatcactgttgagaaatgagttgaccgaggtgaaggatgaggaggatgtg | ||
| *************************************************************************************** | |||
| celegans | .((((...(((((.(((.((((....((((.(((((...(((....)))..))))).))))......)))).))).)))))..)))) | 0.820 -12.30 |
| celegans | chromosome:III:6321182:6321268:1 | intergenic ## {SimpF: WRM0632bB12 1 fosmid,WRM0634dD01 1 fosmid,WRM0635aE12 1 fosmid,WRM0640dD03 1 fosmid,WRM0621aF01 1 fosmid,WRM062cB03 1 fosmid,WRM0611aG08 1 fosmid} |
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