other hairpins
novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH (1 loci)
novel_lenNOK_cloningOK_bulgeHIGH (1 loci)
block1701 [novel_lenNOK_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.64/0.65 | 22/26/0.50 | 0.0 | 1.7 | 6 | 0 | 1 | 0 | 12 | 0 | 3arm | 1 | nd | 0.23 | 4 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------AAGAUUG------------------------------ | 6 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------GAAGATTGCGACGGCCGGAAGG---------------- | 22 | 3 | |
| ------------------------------------------GAAGATTGCGACGGCCGGAAGGACG------------- | 25 | 2 | |
| ------------------------------------------GAAGATTGCGACGGCCGGAAGGACGG------------ | 26 | 1 | |
| celegans | atctttcttctctcctttcggtcctcctttctttcctccacaGAAGATTGCGACGGCCGGAAGGACGGcaacagcaaggg | ||
| ******************************************************************************** | |||
| celegans | .((((.((.((.(((((((((((.((...(((((........)))))....)).))))))))))).))....)).)))). | 0.850 -23.60 |
| celegans | chromosome:II:5758477:5758556:-1 | intergenic ## {SimpF: WRM0634cF07 -1 fosmid,WRM067aH11 -1 fosmid,WRM0612bF07 -1 fosmid,F10C1.3 -1 Expression_profile,WRM0639cA03 -1 fosmid,WRM0611aA03 -1 fosmid} |
novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH (1 loci)
block707 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.33/0.40 | 21/25/0.11 | 0.0 | 0.0 | 8 | 0 | 1 | 0 | 13 | 11 | 5arm | 1 | nd | 0.36 | 4 | 9 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------AUGUUAA---------------------------------------------------------------------------- | 9 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------GATGTTAATTGTACGACAAGTAGGG----------------------------------------------------------- | 25 | 8 | |
| -------------GATGTTAATTGTACGACAAGT--------------------------------------------------------------- | 21 | 1 | |
| celegans | actcttattcttcGATGTTAATTGTACGACAAGTAGGGaatgaatgattgttgaggagttttggaaatgttgttggaacaattaggaagaggggggg | ||
| ************************************************************************************************* | |||
| celegans | .((((..((((((....((((((((.((((((.((......((((..((....))..))))......))))))))..))))))))))))))..)))) | 0.950 -20.30 |
| celegans | chromosome:I:1798656:1798752:1 | intergenic ## {SimpF: Y71G12A_203.A 1 Expression_profile} |
novel_lenNOK_cloningOK_shortStem (1 loci)
block5542 [novel_lenNOK_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.146 | no | no | 0.26/0.29 | 19/21/0.20 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 0 | 10 | 5arm | 1 | nd | 0.26 | 3 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GAUGAUU------------------------------------------------------------ | 5 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| TGATGATTTCATATGTAGT------------------------------------------------- | 19 | 4 | |
| TGATGATTTCATATGTAGTAG----------------------------------------------- | 21 | 1 | |
| celegans | TGATGATTTCATATGTAGTagtttatatgtagcaaccgttccagactacgcattttctaaactatcaa | ||
| ******************************************************************** | |||
| celegans | (((((.(((...((((.(((((((..(((.......)))...))))))))))).....))).))))). | 0.990 -10.90 |
| celegans | chromosome:IV:6810795:6810862:1 | intergenic ## {SimpF: WRM0637aC09 1 fosmid,WRM068cH03 1 fosmid,WRM0634dG10 1 fosmid,WRM061cF04 1 fosmid} |
novel_lenNOK_loopOverlap_bulgeHIGH (1 loci)
block905 [novel_lenNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.039 | no | no | 0.40/0.40 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | -4 | 5arm_loop | 1 | nd | 0.28 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------UUUCUUG-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------GTTTCTTGTTGACTGACGTCATCTT--------------------------------------- | 25 | 1 | |
| celegans | catttcGTTTCTTGTTGACTGACGTCATCTTctgctcactgatgtcaaattcaaaaagacagacggttga | ||
| ********************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................... | T27A3.5 T27A3.5 T27A3.5 | ||
| celegans | ((..(((((((((.((((.((((((((............))))))))...)))).))))..))))).)). | 1.000 -16.70 |
| celegans | chromosome:I:6101656:6101725:1 | Opposite_strand|Boundary_non-coding|T27A3.5|T27A3.5 ## T27A3.5|protein_coding|T27A3.5|T27A3.5 [Source:RefSeq_peptide;Acc:NP_491761] ## {SimpF: WRM0632dE08 1 fosmid,WRM0617cA08 1 fosmid,WRM0640cD10 1 fosmid,WRM0623cH06 1 fosmid} |
novel_lenNOK_loopOverlap_randfoldOK (1 loci)
block8081 [novel_lenNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 23 | -3 | 3arm_loop | 1 | nd | 0.17 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------UGUAGAA--------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------TTGTAGAAGTTTGATACT----------------------- | 18 | 2 | |
| celegans | gtttcagacagttgtcttagcggtgttatatttaaacttctgtTTGTAGAAGTTTGATACTaaatgagaaaatgattgagaaac | ||
| ************************************************************************************ | |||
| celegans | .((((((.((....(((((..(((((((......((((((((....)))))))))))))))...)))))...)).))))))... | 1.000 -20.80 |
| celegans | chromosome:X:16883402:16883485:-1 | intergenic ## {SimpF: WRM068aE01 -1 fosmid,WRM0624dB02 -1 fosmid,WRM0631cA08 -1 fosmid,WRM064dG08 -1 fosmid,WRM0636aG05 -1 fosmid,WRM069dH03 -1 fosmid,WRM068bE05 -1 fosmid,WRM063bD10 -1 fosmid,WRM0639dE10 -1 fosmid,WRM0639bE01 -1 fosmid} |
block5372 [novel_lenNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.26/0.26 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 10 | 6 | 5arm | 1 | 2 | 0.21 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------GAUAGAA-------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------TGATAGAAGTAGATTTTAC--------------------------------------------------- | 19 | 2 | |
| celegans | atgataacaaTGATAGAAGTAGATTTTACagcttcacttgccggatgttttggagtctccatttatgcgattgcaatcaa | ||
| ******************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | Y9C9A.7 Y9C9A.7 str-153 | ||
| celegans | .((((..((((((((((...((((((((.(((.((........)).))).))))))))...))))).)).)))..)))). | 0.460 -13.60 |
| celegans | chromosome:IV:4934954:4935033:1 | Same_strand|Intronic_coding|Y9C9A.7|Y9C9A.7 ## Y9C9A.7|protein_coding|str-153|Seven TM Receptor family member (str-153) [Source:RefSeq_peptide;Acc:NP_500677] ## {SimpF: Y9C9A_54.D 1 Expression_profile} |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
sblock6 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.412 | no | no | 0.50/0.50 | 26/26/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 23 | 13 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.38 0.35 | 6 4 | 2 | 1 | 0 | -20 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------UUGAAGU----------------------------------------- | 1 | novel |
| seed | -UCUUCUU------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| GTCTTCTTATGATGGCTGCCTCGATG------------------------------------------------------------------------ | 26 | 1 | |
| -------------------------------------------------GTTGAAGTGGAAGAGTCTGAGTTCGG----------------------- | 26 | 1 | |
| celegans | GTCTTCTTATGATGGCTGCCTCGATGggcgatttcgcttgtggttcattGTTGAAGTGGAAGAGTCTGAGTTCGGggtgtcttagttgcacgttgtag | ||
| ************************************************************************************************** | |||
| celegans | .......((..(((((.(((((((.((((..((((((((..............))))))))..))))....))))))).........)).)))..)). | 0.810 -25.44 |
| celegans | chromosome:I:2149911:2150008:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (1 loci)
sblock1 [novel_lenNOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.298 | no | no | 0.38/0.42 | 21/26/0.33 | 0.0 0.0 | 0.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 3 7 | 1 5 | 5arm 3arm | 1 1 | nd nd | 0.38 0.43 | 4 6 | 3 | 1 | 1 | -4 |
| reads | miRBase family seed | ||
| seed | ----ACUUUGA-------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------AGUUUUU-------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---GACTTTGATGGTGCCATTATAACTCC-------------------------------------- | 26 | 1 | |
| ---------------------------------------GAGTTTTTGTTTGAACCTTGG------- | 21 | 1 | |
| ---GACTTTGATGGTGCCATTATAACTC--------------------------------------- | 25 | 1 | |
| celegans | tttGACTTTGATGGTGCCATTATAACTCCgttctcgtttGAGTTTTTGTTTGAACCTTGGagacaag | ||
| ******************************************************************* | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<.................................................... | C43E11.5 C43E11.5 C43E11.5 | ||
| celegans | .(((.((..((.(((..((....(((((((....))...)))))......)).)))))..)).))). | 0.450 -11.40 |
| celegans | chromosome:I:4236988:4237054:-1 | Opposite_strand|Boundary_non-coding|C43E11.5|C43E11.5 ## intergenic ## C43E11.5|protein_coding|C43E11.5|C43E11.5 [Source:RefSeq_peptide;Acc:NP_491335] ## {SimpF: WRM066aD06 -1 fosmid,CEOP1156 -1 Operon,WRM0631dH05 -1 fosmid,WRM0634bF08 -1 fosmid} |
novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)
block5327 [novel_lenNOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.594 | no | no | 0.44/0.46 | 24/26/0.33 | 0.0 0.0 | 1.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 17 29 | 0 -11 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.38 0.44 | 4 7 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------AUAAUGA--------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------ACCAAUC--------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------GACCAATCCAAGAGATGCCAGTTTT---------------------------------------- | 25 | 1 | |
| -----------------GATAATGAACCCGACCAATCCAAGAG--------------------------------------------------- | 26 | 1 | |
| -----------------GATAATGAACCCGACCAATCCAAG----------------------------------------------------- | 24 | 1 | |
| celegans | atcacgacgagctcgacGATAATGAACCCGACCAATCCAAGAGATGCCAGTTTTtggaaaaattcttcctcgatgttgaatgcttgaactgatg | ||
| ********************************************************************************************** | |||
| celegans | ((((...(((((....(((((.(((....((....((((((((.......)))))))).....))....))).)))))...)))))...)))). | 0.520 -17.20 |
| celegans | chromosome:IV:3907455:3907548:1 | intergenic ## {SimpF: WRM068aF02 1 fosmid,WRM0634bC03 1 fosmid,WRM0633cH10 1 fosmid} |
novel_lenNOK_randfoldOK_nonpairedHIGH (1 loci)
block7926 [novel_lenNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 27 | 3arm | 1 | nd | 0.33 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------------ACAUAAU--------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------------------GACATAATGATTGACAAG----------- | 18 | 1 | |
| celegans | cacttcgttttcgagttgatgatgtgtcgaacacgagttgacaaaccaagaggagtccgaccgatccgattattcaaattcaaccggtttcGACATAATGATTGACAAGaaagcgagtgt | ||
| ************************************************************************************************************************ | |||
| celegans | (((.((((((((..((..((.((((((((((..((.(((((........(((.((((.((....)).)))).)))....)))))))..)))))))).)).))..))..))))))))))). | 0.590 -39.20 |
| celegans | chromosome:X:13124424:13124543:-1 | intergenic ## {SimpF: WRM061aC12 -1 fosmid,WRM0634cE07 -1 fosmid,WRM0614cA01 -1 fosmid,WRM0638cA06 -1 fosmid,WRM0618aF10 -1 fosmid,WRM0625aC05 -1 fosmid,WRM0612dF12 -1 fosmid,WRM063aF02 -1 fosmid,WRM061aD10 -1 fosmid,WRM0638dA03 -1 fosmid} |
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