other hairpins
novel_lenNOK_randfoldOK_nonpairedHIGH (1 loci)
novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block2097 [novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.26/0.26 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 26 | 3arm | 1 | nd | 0.32 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------UUUUUGA--------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------------ATTTTTGAGAATTTTCGCT---------- | 19 | 1 | |
| celegans | attcagttttttttccaaaattttgagaatttttgcaaaaatctgggagttttaatcaaaaagttgaaattttttctatttttccaaaATTTTTGAGAATTTTCGCTaaaatctgaa | ||
| ********************************************************************************************************************* | |||
| celegans | .(((((.((((.....((((((((.((((.(((((.((((((..((((((((((((......))))))))))))...)))))).))))).)))).))))))))....)))).))))) | 1.000 -24.90 |
| celegans | chromosome:II:15109532:15109648:-1 | intergenic ## {Repeats: dust 54843 54862 0 class=dust} |
novel_lenNOK_shortStem_5varHIGH_loopOverlap (1 loci)
block2978 [novel_lenNOK_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.343 | no | no | 0.24/0.39 | 18/25/0.33 | 1.7 | 5.0 | 3 | 0 | 1 | 0 | 0 | -4 | 5arm_loop | 1 | nd | 0.19 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -AACAGAU------------------------------------------------------------------ | 2 | novel |
| seed | ------AUGAGUG------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| GAACAGATGAGTGAAATG-------------------------------------------------------- | 18 | 1 | |
| GAACAGATGAGTGAAATGATT----------------------------------------------------- | 21 | 1 | |
| -----GATGAGTGAAATGATTAAAAATAAG-------------------------------------------- | 25 | 1 | |
| celegans | GAACAGATGAGTGAAATGATTAAAAATAAGaactgatgaaattgaacctttttgaatatttcgttttgatgttt | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ZC395.8 ZC395.8 ztf-8 | ||
| celegans | (((((...((((((((((.(((((((......................))))))).))))))))))...))))) | 1.000 -9.85 |
| celegans | chromosome:III:5270032:5270105:-1 | Same_strand|Intronic_coding|ZC395.8|ZC395.8 ## ZC395.8|protein_coding|ztf-8|Zinc finger Transcription Factor family member (ztf-8) [Source:RefSeq_peptide;Acc:NP_498124] ## {SimpF: ZC395.8 -1 Expression_profile,yk354c1 -1 RNAi,WRM0625aB02 -1 fosmid,CEOP3276 1 Operon,WRM0623cG12 -1 fosmid,WRM0636cF02 -1 fosmid} |
novel_lenNOK_shortStem_bulgeHIGH (1 loci)
block7650 [novel_lenNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.15/0.15 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 1 | 5arm | 1 | nd | 0.23 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UUUCAUU------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----GTTTCATTATTTTTTAAAAATTAGAG------------------------------------------ | 26 | 1 | |
| celegans | aattGTTTCATTATTTTTTAAAAATTAGAGcggcatccaatggttttgaggtgaattgtagttgaggcagtt | ||
| ************************************************************************ | |||
| celegans | ((((((((((((((..((((....(((((((...........)))))))..))))..))))).))))))))) | 0.990 -16.00 |
| celegans | chromosome:X:1792455:1792526:-1 | intergenic ## {SimpF: WRM0634aB01 -1 fosmid,WRM0615cE03 -1 fosmid,WRM065dB05 -1 fosmid,WRM068aC12 -1 fosmid,WRM0639cA04 -1 fosmid,WRM0619dF11 -1 fosmid,WRM0618dG07 -1 fosmid} |
novel_lenNOK_shortStem_loopOverlap (1 loci)
block6152 [novel_lenNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -1 | 3arm | 1 | nd | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------UUCUUAG---------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------TTTCTTAGGGCTTTTGGC | 18 | 1 | |
| celegans | tcagaaaacttaaggacacatTTTCTTAGGGCTTTTGGC | ||
| *************************************** | |||
| celegans | ((((((..((((((((......))))))))..)))))). | 1.000 -11.00 |
| celegans | chromosome:IV:16040128:16040166:1 | intergenic |
novel_loopOverlap_bulgeHIGH (1 loci)
block8137 [novel_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.795 | no | no | 0.25/0.25 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 40 | -3 | 5arm_loop | 1 | nd | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------UGGAAAA------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------ATGGAAAAGAAAAAAATCGA------------------------------------------------------------ | 20 | 1 | |
| celegans | ttcttaatccacaaacagtcgccagcttgcttcaattaaaATGGAAAAGAAAAAAATCGAatatgttacatttttttcttattagtattgcatgcgaaacaagagcgtcgtcgaagagaa | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | F35H12.6 F35H12.6 F35H12.6 | ||
| celegans | .((((..((.((.......(((...((((.(((.(((((.((.((.(((((((((((............))))))))))).)).)).))).))..))).)))).)))..)).)).)))). | 0.410 -15.20 |
| celegans | chromosome:X:913758:913877:1 | Same_strand|Intronic_coding|F35H12.6|F35H12.6 ## F35H12.6|protein_coding|F35H12.6|F35H12.6 [Source:RefSeq_peptide;Acc:NP_741711] ## {SimpF: WRM0639bH02 1 fosmid,WRM069aE04 1 fosmid,WRM0633cH09 1 fosmid,WRM061bA04 1 fosmid,WRM0626cF08 1 fosmid} |
novel_loopOverlap_randfoldOK_bulgeHIGH (1 loci)
block4922 [novel_loopOverlap_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | -3 | 3arm_loop | 1 | nd | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------UUGUUUG---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------TTTGTTTGGTGGCCTTATTG---------------------- | 20 | 1 | |
| celegans | tgtgatacatttgctgcattaatgagagtaagacaaTTTGTTTGGTGGCCTTATTGatgttagtgaaatatgccacat | ||
| ****************************************************************************** | |||
| celegans | ((((.((..((..(((((((((((((.((.((((.....))))....))))))))))))).))..))...)).)))). | 1.000 -21.00 |
| celegans | chromosome:IV:15322798:15322875:-1 | intergenic |
novel_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)
block758 [novel_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | -4 | 3arm_loop | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------AAUUGCC--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------AAATTGCCAGGCAACAACAAC-------------- | 21 | 1 | |
| celegans | ttctctcggggtattgttgatgcaagaaaacaacaccaagagaaacaaaacaatggtacAAATTGCCAGGCAACAACAACatttttgggggaaa | ||
| ********************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------- | Y54E10A.9a Y54E10A.9 vbh-1 | ||
| celegans | (((((((((((..((((((.(((..............................(((((.....))))).))).))))))...))))))))))). | 0.980 -21.58 |
| celegans | chromosome:I:3159349:3159442:1 | Opposite_strand|Boundary_non-coding|Y54E10A.9c|Y54E10A.9 ## Opposite_strand|Intronic_non-coding|Y54E10A.9a|Y54E10A.9 ## Y54E10A.9|protein_coding|vbh-1|Vasa- and Belle-like Helicase family member (vbh-1) [Source:RefSeq_peptide;Acc:NP_491113] ## {SimpF: yk303d4 1 RNAi,yk321c5 1 RNAi} |
novel_multiarm_DicerNOK_loopOverlap (1 loci)
sblock40 [novel_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.193 | no | no | 0.61/0.70 | 21/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 6 28 7 | 6 -18 1 | 5arm 5arm_loop_3arm 3arm | 1 2 2 | nd nd nd | 0.29 0.57 0.30 | 2 8 2 | 3 | 1 | -5 | -1 |
| reads | miRBase family seed | ||
| seed | -----------------------------GAGUGGA------------------------------------ | 1 | novel |
| seed | -------AGUCUCU---------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------GACGAUG---------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------CGACGATGGCTGCGGCGAGGATG------- | 23 | 1 | |
| ----------------------------GGAGTGGATGACGACGACGATGG--------------------- | 23 | 1 | |
| ------GAGTCTCTGTGTGCTGGTCGG--------------------------------------------- | 21 | 1 | |
| celegans | tccactGAGTCTCTGTGTGCTGGTCGGtGGAGTGGATGACGACGACGATGGCTGCGGCGAGGATGatgtgga | ||
| ************************************************************************ | |||
| >>>>>>>>>>>>>>>>>................................................................. | Y57G11C.57 Y57G11C.57 Y57G11C.57 | ||
| celegans | (((((...(((..(((.(((.(((((.((..((........))..)).)))))))))))..)))...))))) | 1.000 -22.40 |
| celegans | chromosome:IV:14780841:14780912:-1 | Same_strand|Boundary_non-coding|Y57G11C.57|Y57G11C.57 ## intergenic ## Y57G11C.57|pseudogene|Y57G11C.57| ## {Repeats: trf 32 41 0 class=trf} ## {SimpF: oe = 1.21 0 CpG} |
novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (1 loci)
sblock36 [novel_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.384 | no | no | 0.48/0.57 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 13 15 | -3 -4 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.48 0.33 | 6 3 | 2 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | --------------UCUAUCG------------------------------------------------- | 1 | novel |
| seed | -----------------------------------UUCGUUU---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------GTCTATCGGGGACCTCTAGCCAT---------------------------------- | 23 | 1 | |
| ----------------------------------ATTCGTTTGAGATGGTCTGGC--------------- | 21 | 1 | |
| celegans | gatcatgatttttGTCTATCGGGGACCTCTAGCCATTCGTTTGAGATGGTCTGGCaaatgagcatagatt | ||
| ********************************************************************** | |||
| celegans | (((((((...((((((......((((((((.((.....))...))).)))))))))))....))).)))) | 0.800 -14.80 |
| celegans | chromosome:IV:6356984:6357053:-1 | intergenic |
novel_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block5374 [novel_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.33/0.33 | 21/21/1.00 | 0.5 | 0.5 | 2 | 0 | 1 | 0 | 13 | 8 | 5arm | 1 | nd | 0.38 | 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------UUGUUUA--------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------UGUUUAU-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------TTGTTTATTGCTCTGGTTGTT------------------------------------------------------------------- | 21 | 1 | |
| -------------TTTGTTTATTGCTCTGGTTGT-------------------------------------------------------------------- | 21 | 1 | |
| celegans | gcggagtttagaaTTTGTTTATTGCTCTGGTTGTTtggttaaaaatgaaaaaaaaactatttaatcgtcagttctagagctatggggtaatttaactcggca | ||
| ****************************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------------------- | Y9C9A.13 Y9C9A.13 Y9C9A.13 | ||
| celegans | ((.(((((..(((((..(((((.(((((((.....((((((((................))))))))......))))))).)))))..)))))))))).)). | 1.000 -26.59 |
| celegans | chromosome:IV:4966637:4966738:1 | Opposite_strand|Intronic_coding|Y9C9A.13|Y9C9A.13 ## Y9C9A.13|protein_coding|Y9C9A.13|Y9C9A.13 [Source:RefSeq_peptide;Acc:NP_500685] ## {SimpF: WRM065bG06 1 fosmid,WRM0633cB09 1 fosmid,WRM0630aF12 1 fosmid,Y9C9A_54.B 1 Expression_profile} |
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