cel-let-7
| absolute | CE1 |
| cel-let-7 5arm | 1580 |
| cel-let-7 3arm | 3 |
| normalized | CE1 |
| cel-let-7 5arm | 1.104 |
| cel-let-7 3arm | 0.002 |
sblock66 (miRBase cel-let-7) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-let-7 | 0.001 | no | no | 0.30/0.40 | 18/23/0.96 | 0.0 0.0 | 0.0 1.3 | 1336 3 | 0 0 | 1 1 | 0 0 | 16 18 | 3 8 | 5arm 3arm | 1 1 | nd nd | 0.05 0.05 | 1 1 | 1583 | 1 | 2 | 2 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cel-mir-795, cel-mir-48, cel-mir-241, cel-let-7, cel-mir-84 |
| reads | miRBase family seed | ||
| seed | --------------------------------------GAGGUAG---------------------------------------------------------------------------------------------------------- | 1541 | miR-241/48/let-7/84 |
| seed | ---------------------------------------AGGUAGU--------------------------------------------------------------------------------------------------------- | 20 | novel |
| seed | ------------------------------------------UAGUAGG------------------------------------------------------------------------------------------------------ | 19 | novel |
| seed | --------------------------------------------------------------------------------------------UAUGCAA---------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-let-7 | -------------------------------------TGAGGTAGTAGGTTGTATAGTT-------------------------------------------------------------------------------------------- | 22 | 1336 |
| -------------------------------------TGAGGTAGTAGGTTGTATAGTTT------------------------------------------------------------------------------------------- | 23 | 77 | |
| -------------------------------------TGAGGTAGTAGGTTGTATAGT--------------------------------------------------------------------------------------------- | 21 | 72 | |
| -------------------------------------TGAGGTAGTAGGTTGTAT------------------------------------------------------------------------------------------------ | 18 | 48 | |
| -----------------------------------------GTAGTAGGTTGTATAGTT-------------------------------------------------------------------------------------------- | 18 | 19 | |
| --------------------------------------GAGGTAGTAGGTTGTATAGTT-------------------------------------------------------------------------------------------- | 21 | 18 | |
| -------------------------------------TGAGGTAGTAGGTTGTATAG---------------------------------------------------------------------------------------------- | 20 | 5 | |
| -------------------------------------TGAGGTAGTAGGTTGTATA----------------------------------------------------------------------------------------------- | 19 | 3 | |
| -------------------------------------------------------------------------------------------CTATGCAATTT-TCTACCTTACC------------------------------------- | 22 | 1 | |
| --------------------------------------GAGGTAGTAGGTTGTATAGT--------------------------------------------------------------------------------------------- | 20 | 1 | |
| --------------------------------------GAGGTAGTAGGTTGTATAGTTT------------------------------------------------------------------------------------------- | 22 | 1 | |
| -------------------------------------------------------------------------------------------CTATGCAATTT-TCTACCTTA--------------------------------------- | 20 | 1 | |
| -------------------------------------------------------------------------------------------CTATGCAATTT-TCTACCTT---------------------------------------- | 19 | 1 | |
| celegans | ---------------------TACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACC----------ACCGGTG-AACTATGCAATTT-TCTACCTTACCGGAGACAGAACTCTTCGA------------------- | ||
| cbriggsae | GGGATTGCAGGATGATGGCTCTACACTG-GGGTACGGTGAGGTAGTAGGTTGTATAGTTTAGAATATTACT----------CTCGGTG-AACTATGCAAGTT-TCTACCTCACCGAATACCAGGTTCTC--AACTGCATCGTGTCAATTAC | ||
| ppacificus | -------------------------------------TGAGGTAGTAGGTTGTATAGTTCGGAATAATACCAACTGTATCAATTGGTGAAACTGTACAACCTGTCTAGCTTG--------------------------------------- | ||
| cbrenneri | -------------------------------------TGAGGTAGTAGGTTGTATAGTTTAGAATCATATC-----------CCGGTG-AACTATGCAAGCT-TCTACCTCA--------------------------------------- | ||
| cremanei | ---GGCAGATGGCGGCCGGTCAACACTGTGCGTCTGGTGAGGTAGTAGGTTGTATAGTTTAGAATCTTACC-----------TTGGTG-AACTATGCAAGTT-TCTACCTCACCAGATACAGAATCTTCTCAGCTGCATCGTCTTGCT--- | ||
| ********************** **** ** **** **** * *** * **** ** | |||
| celegans | ....((((...(((((((((((((.((((((((((((((((......... .))...) ))))))))))))) .))))))))))))).)))).......... | 1.000 -42.90 | |
| cbriggsae | ..(((((((.((((........((.((( (.((.(((((((((((.((.((((((((((((((.......) ))....) )))))))))).)) .))))))))))).)).)))))).... .....)))).)).))))).. | 0.988 -53.43 | |
| ppacificus | .(((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).))). | 0.918 -27.00 | |
| cbrenneri | .(((((((.((.((((((((((((.......... ....)) )))))))))).)) .))))))). | 1.000 -26.84 | |
| cremanei | (((((((((((((.((......((((..((((((((((((((.((.(((((((((((...(((..... ..)))) )))))))))).)) .)))))))))))))))))).......)).)))))..))))).))) | 0.965 -56.92 |
| celegans | chromosome:X:14744094:14744192:-1 | intergenic ## {SimpF: WRM068bD07 -1 fosmid,WRM0628cG07 -1 fosmid,WRM0611aA11 -1 fosmid,WRM0625cH04 -1 fosmid,WRM0641dA03 -1 fosmid,WRM061dD08 -1 fosmid} ## {MIR: cel-let-7} |
| cbriggsae | chromosome:chrX:18407608:18407743:1 | Same_strand|Intronic_coding|NM_078046 ## Opposite_strand|Intronic_coding|NM_078045 ## {MIR: cbr-let-7} |
| ppacificus | chromosome:chrUn:94902673:94902811:1 | intergenic |
| cbrenneri | chromosome:chrUn:8202022:8202160:1 | Same_strand|Intronic_coding|NM_001003448 |
| cremanei | chromosome:chrUn:79515412:79515543:-1 | Opposite_strand|Intronic_coding|NM_003428 |
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