C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-795

cel-mir-795

Cloning frequencies
absolute	CE1
cel-mir-795 5arm	15
normalized	CE1
cel-mir-795 5arm	0.010

cel-mir-795 relative cloning frequencies

block1209 (miRBase cel-mir-795) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-795	0.001	no	no	0.46/0.48	19/24/0.94	0.0	0.0	13	0	1	0	14	2	5arm	1	nd	0.17	2	15	1	na	na

Families
Member of family miR-241/48/let-7/84 (seed GAGGUAG): cel-mir-795, cel-mir-48, cel-mir-241, cel-let-7, cel-mir-84

block1209 hairpin

		reads	miRBase family seed
seed	------------------------GAGGUAG----------------------------------------------------------------------------------	15	miR-241/48/let-7/84
		len	cloning frequencies
			CE1
cel-miR-795	-----------------------TGAGGTAGAT-----TGATCAGCGAGCTT-------------------------------------------------------------	24	13
	-----------------------TGAGGTAGAT-----TGATCAGCG------------------------------------------------------------------	19	1
	-----------------------TGAGGTAGAT-----TGATCAGCGAGCT--------------------------------------------------------------	23	1
celegans	---------GAAACGTTACCTGCTGAGGTAGAT-----TGATCAGCGAGCTTGATACCCCGTTCAAAATCGTGATCAGTATACTTCGTCAGGCAGCTTGTTTT----------
cremanei	-----------------------TGAGGTAGACAC--AGTGGCTACGAATCTA-----CCAACCAGGGTTCGAGTCCACATACCTCA--------------------------
cbriggsae	-----------------------CGAGGTAGAT-----TGAGAATTGAGATTG--------------ATTGAAATCAACTCGGCTCACTTTCAGTATCCTG------------
cjaponica	GTGTGATTGGGGCGCGTTTGCACTGAGGTAGGTGCCAGCATGCCGTGATACTTCCATTTCAACATATTTCTGCTCCACCACGTCTCAGTTTTCACGCGTTTCCATTTTCAAAC
ppacificus	-----------------------CGAGGTAGAAATGCATTCG-TATGAGTTTGAGTGGATGATCGAAATC-AAGTGACCGTTTCTAACTGCG---------------------
	***** * * *
celegans	((((((((.((((.(((((((.(( ((((((.(((..((((........))))..))))))))))).))))))).)))).)))..)))))	1.000 -33.50
cremanei	.((((((..... .((((((.(((((((. .......))))))))).)))).)))))).	1.000 -22.20
cbriggsae	..(((...(( (((((..((((.((( ((((....))).)))))))).)))))))..))).	1.000 -15.90
cjaponica	...(((.((((((((((....(((((((..((((..((((.....(((..........))).........)))).))))...)))))))....))))))).)))...)))...	0.996 -30.34
ppacificus	((((.((((((((...((( ..(((.(((((........))))).)) )..))).)))))))).)).))	0.960 -15.80

celegans	chromosome:I:12594558:12594646:1	intergenic ## {SimpF: WRM0624dH02 1 fosmid,WRM0612aE11 1 fosmid,WRM0638dG06 1 fosmid} ## {MIR: cel-mir-795}
cremanei	chromosome:chrUn:129581540:129581668:-1	intergenic
cbriggsae	chromosome:chrI:3896350:3896478:1	Same_strand\|Intronic_coding\|NM_026450 ## Opposite_strand\|Intronic_coding\|NM_001024290
cjaponica	chromosome:chrUn:141216652:141216764:1	intergenic
ppacificus	chromosome:chrUn:27273809:27273937:-1	intergenic

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