cel-mir-48
| absolute | CE1 |
| cel-mir-48 5arm | 186 |
| cel-mir-48 3arm | 11 |
| normalized | CE1 |
| cel-mir-48 5arm | 0.130 |
| cel-mir-48 3arm | 0.008 |
sblock58 (miRBase cel-mir-48) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-48 | 0.002 | no | no | 0.50/0.62 | 19/23/0.99 | 0.0 0.0 | 0.0 0.0 | 176 11 | 0 0 | 1 1 | 0 0 | 15 24 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.23 0.24 | 2 2 | 197 | 1 | 1 | 1 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cel-mir-795, cel-mir-48, cel-mir-241, cel-let-7, cel-mir-84 |
| reads | miRBase family seed | ||
| seed | ------------------------------GAGGUAG------------------------------------------------------------------------------------------- | 179 | miR-241/48/let-7/84 |
| seed | --------------------------------------------------------------------------------CAUCCAC----------------------------------------- | 11 | novel |
| seed | ----------------------------------UAGGCUC--------------------------------------------------------------------------------------- | 5 | novel |
| seed | -------------------------------AGGUAGG------------------------------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------------------GUAGGCU---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------TGAGGTAGGCTCAGTAGATGCG----------------------------------------------------------------------------- | 22 | 176 | |
| -------------------------------------------------------------------------------ACATCCACCAGCCTAGCTCGC---------------------------- | 21 | 11 | |
| ---------------------------------GTAGGCTCAGTAGATGCGAA--------------------------------------------------------------------------- | 20 | 5 | |
| cel-miR-48 | -----------------------------TGAGGTAGGCTCAGTAGATGCGA---------------------------------------------------------------------------- | 23 | 2 |
| --------------------------------GGTAGGCTCAGTAGATGCG----------------------------------------------------------------------------- | 19 | 1 | |
| -----------------------------TGAGGTAGGCTCAGTAGATGC------------------------------------------------------------------------------ | 21 | 1 | |
| ------------------------------GAGGTAGGCTCAGTAGATGCGA---------------------------------------------------------------------------- | 22 | 1 | |
| celegans | --------------AAACTCCCGGGAACTTGAGGTAGGCTCAGTAGATGCGAATTGAA------------CGGTATCTCACATCCACCAGCCTAGCTCGCATTCCCAGAGTTTACGGTATTGTT---- | ||
| cbriggsae | CAAAGTAAGTTTAGAACCATTCGGGATGTTGAGGTAGGCTCAGTAGATGCGAGGAGA--------TCCACCATTC-CTCACATCGTCTGTCCTAACTCGCCTTCCCTTGTGCTTCAATATTTCTTTTG | ||
| cjaponica | -----------------------GGAAAGTGAGGTAGGCTTTGTAGATGTGATTGGAGTGGTGCCACAGGCGGT--CTCACATCCACTCGCCTACCTCGCCTTTCC---------------------- | ||
| cbrenneri | -----------------------------TGAGGTAGGCTCAGTAGATGCGAACGTAAATGAGCCCACATCGGCCTTTCACATCCACTTGCCTTCCTCG----------------------------- | ||
| cremanei | -----------------CATACCGGATGTTGAGGTAGGCTCAGTAGATGCGATCAGAGTTGTGCCTCAGGCGTTC-CTCACATCTTCTTGCCTAACTCGCCTTCCTTTATG----------------- | ||
| *********** ******* ** * * ******* * *** **** | |||
| celegans | ((((((..(((((..((((.((((((..((.((((.((..((.. ...))..)).)))).)).)))))).))))..))))).))))))........... | 1.000 -34.50 | |
| cbriggsae | (((((.((((...(((.(((..((((...((((.((((..(((..((((.((((((. .......))) ))).))))..))).)))).))))...))))..))).)))...)))).))))) | 1.000 -39.00 | |
| cjaponica | ((((((((((((((((...((.((((((((((..(((....)))...))). .))))))).))..))))))))))).))))) | 0.986 -39.00 | |
| cbrenneri | .((((.((((..(((.((((.(((.((..(((......)))..))..))).)))).))).)))).)))). | 0.950 -24.30 | |
| cremanei | ((((..(((...((((.(((((..((.(((((......(((..(((((...))))).. ))).))))).)).))))).))))...)))..)))) | 0.977 -27.70 |
| celegans | chromosome:V:14364390:14364487:-1 | intergenic ## {MIR: cel-mir-48} |
| cbriggsae | chromosome:chrV:12275573:12275691:1 | Opposite_strand|Intronic_coding|NM_074155 ## Same_strand|Intronic_coding|NM_001113262 ## {MIR: cbr-mir-48} |
| cjaponica | chromosome:chrUn:25917622:25917702:-1 | Same_strand|Intronic_coding|NM_001004193 |
| cbrenneri | chromosome:chrUn:94386028:94386165:-1 | intergenic |
| cremanei | chromosome:chrUn:140422769:140422861:1 | Opposite_strand|Intronic_coding|NM_182407 |
©2008 InteRNA Genomics B.V.