cel-mir-241
| absolute | CE1 |
| cel-mir-241 5arm | 36 |
| cel-mir-241 3arm | 4 |
| normalized | CE1 |
| cel-mir-241 5arm | 0.025 |
| cel-mir-241 3arm | 0.003 |
sblock59 (miRBase cel-mir-241) [miRNAknown_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-241 | 0.017 | no | no | 0.45/0.50 | 19/22/0.95 | 0.0 0.0 | 0.0 1.5 | 35 4 | 0 0 | 1 1 | 0 0 | 15 15 | 8 10 | 5arm 3arm | 1 1 | nd nd | 0.10 0.16 | 1 1 | 40 | 1 | 1 | 2 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cel-mir-795, cel-mir-48, cel-mir-241, cel-let-7, cel-mir-84 |
| reads | miRBase family seed | ||
| seed | ------------------------------------G-----AGGUAG------------------------------------------------------------------------------------------------ | 36 | miR-241/48/let-7/84 |
| seed | -------------------------------------------------------------------------------------UUGU-----CUC----------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------TG-----AGGTAGGTGCGAGAAATG------------------------------------------------------------------------------------ | 20 | 35 | |
| ------------------------------------------------------------------------------------ATTGT-----CTCTCAGCTGCTTCATC--------------------------------- | 22 | 2 | |
| ------------------------------------------------------------------------------------ATTGT-----CTCTCAGCTGCTTC------------------------------------ | 19 | 2 | |
| cel-miR-241 | -----------------------------------TG-----AGGTAGGTGCGAGAAATGA----------------------------------------------------------------------------------- | 21 | 1 |
| celegans | --------------------CGGGGGTGTCAAAGTTG-----AGGTAGGTGCGAGAAATGACGGCATCCATATAGTAATCGTTCATTGT-----CTCTCAGCTGCTTCATCTGTGACATGGCTACG------------------ | ||
| cbriggsae | CAAAGTAAGTTTAGAACCATTCGGGATGTTGAGGTAGGC--TCAGTAGATGCGAGGAGATCCACCATTCCTCACATCGTCTGTCCTAACTCGCCTTCCCTTGTGCTTCAATATTTCTTTTG----------------------- | ||
| cjaponica | --------------TTGCCGCTGGGGTGTCAAAGTTG-----AGGTAGGTGCGAGAAATGACGAGAATCATCCAAATCGCGCTCATTGC-----CTCCAATCTGCCTCGACTGGGACGCTC----------------------- | ||
| cbrenneri | -----------GCAAAAAACAAGGGGTGTCAAAGTAG-----AGGTAGGTGCGAGAAATGACGGGCATCGTGCAA--ATCGTTCATTGT-----CTCCCAGCTACTTCAACTGTGATTTCAACCCTTTGAATTGACTTTTTTGT | ||
| ppacificus | ------------TTGATTGTCTGGGAGAGAGAAGAAGGAAAGAGGTAGGGCGGAGGAGAGCAGGTAGATCACTAGCCTCCTCTCGGCCT----CTTCCTAACTCCGTCCATCGAACGGTAGTCAA------------------- | ||
| cremanei | -----------------------------------AG-----AGGTAGGTGCGAGAAATGACGGAACCTCACAAATCATCGTTCATTGT-----CTCGCAGCTGCTTCA----------------------------------- | ||
| * **** *** * * ** ** * * ** | |||
| celegans | .((..((((((.((.(( ((((((.((.((((((((((((...(......)...))).))))).) ))).)).)))))))).)).))))))..))... | 1.000 -33.40 | |
| cbriggsae | (((((.((((...(((.(((..((((...((((.((((. .(((..((((.((((((........)))))).))))..))).)))).))))...))))..))).)))...)))).))))) | 1.000 -39.00 | |
| cjaponica | .........(((((((..((((( (((((((((.(((.(((((((.((..........)).)).))))).. ))))).))))))))))))..))))))) | 0.972 -39.90 | |
| cbrenneri | ((((((((((((((((((((.(((.( ((((((.((.(((((((((((.((.....)).. ..))).)))).) ))).)).))))))).))).))))....)))))))).......)))))))) | 0.995 -42.81 | |
| ppacificus | .((((((.(((...((..((....(((...(((.(((.((((((((.((.(((.....))).)))))))).)).))) ...)))...))).))..))...))))))))). | 0.995 -41.30 | |
| cremanei | .( ((((((.(((((((((((((((..............)))).)))).) )))))).))))))). | 1.000 -27.24 |
| celegans | chromosome:V:14366166:14366261:-1 | intergenic ## {SimpF: WRM0636cG07 -1 fosmid} ## {MIR: cel-mir-241} |
| cbriggsae | chromosome:chrV:12275573:12275691:1 | Opposite_strand|Intronic_coding|NM_074155 ## Same_strand|Intronic_coding|NM_001113262 ## {MIR: cbr-mir-48} |
| cjaponica | chromosome:chrUn:25919622:25919718:-1 | Same_strand|Intronic_coding|NM_001004193 |
| cbrenneri | chromosome:chrUn:94388181:94388301:-1 | intergenic |
| ppacificus | chromosome:chrUn:79364397:79364505:-1 | Opposite_strand|Intronic_coding|NM_001091302 |
| cremanei | chromosome:chrUn:140421350:140421485:1 | Opposite_strand|Intronic_coding|NM_182407 |
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