cel-mir-84
| absolute | CE1 |
| cel-mir-84 5arm | 112 |
| cel-mir-84 3arm | 10 |
| normalized | CE1 |
| cel-mir-84 5arm | 0.078 |
| cel-mir-84 3arm | 0.007 |
sblock69 (miRBase cel-mir-84) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-84 | 0.001 | no | no | 0.22/0.43 | 18/23/0.99 | 0.0 0.4 | 0.6 0.8 | 103 10 | 0 0 | 1 1 | 0 0 | 8 5 | 2 3 | 5arm 3arm | 1 1 | nd nd | 0.17 0.10 | 1 1 | 122 | 1 | 1 | 3 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cel-mir-795, cel-mir-48, cel-mir-241, cel-let-7, cel-mir-84 |
| reads | miRBase family seed | ||
| seed | -------------------------------GAGGUAG---------------------------------------------------------------------------------- | 110 | miR-241/48/let-7/84 |
| seed | ----------------------------------------------------------------------------ACAAUGU------------------------------------- | 8 | novel |
| seed | ------------------------------------------------------------------------------AAUGUUU----------------------------------- | 2 | novel |
| seed | --------------------------------AGGUAGU--------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------UAGUAUG------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------TGAGGTAGTATGT-AATATTGT-------------------------------------------------------------------- | 21 | 71 | |
| ------------------------------TGAGGTAGTATGT-AATATTGTAG------------------------------------------------------------------ | 23 | 32 | |
| ------------------------------TGAGGTAGTATGT-AATATTG--------------------------------------------------------------------- | 20 | 7 | |
| ---------------------------------------------------------------------------CACAATGTTTCAACTAACTCGG----------------------- | 22 | 3 | |
| ---------------------------------------------------------------------------CACAATGTTTCAACTAACTCGGC---------------------- | 23 | 3 | |
| ---------------------------------------------------------------------------CACAATGTTTCAACTAACTCG------------------------ | 21 | 2 | |
| -----------------------------------------------------------------------------CAATGTTTCAACTAACTCGGC---------------------- | 21 | 1 | |
| -------------------------------GAGGTAGTATGT-AATATTGTA------------------------------------------------------------------- | 21 | 1 | |
| -----------------------------------------------------------------------------CAATGTTTCAACTAACTCGGCT--------------------- | 22 | 1 | |
| ----------------------------------GTAGTATGT-AATATTGTA------------------------------------------------------------------- | 18 | 1 | |
| cel-miR-84 | ------------------------------TGAGGTAGTATGT-AATATTGTA------------------------------------------------------------------- | 22 | - |
| celegans | ----------------GTGG------CATCTGAGGTAGTATGT-AATATTGTAGACTG-TCTA-----TAATGTCCACAATGTTTCAACTAACTCGGCTGTTCT---------------- | ||
| cbriggsae | ---GTACTGTCTGAAAATAA------CATCTGAGGTAGTTTGC-AATGCTGTCGACGTAACTG-----AAAAGTCAACATCATTCCAACTTCCTCGGCTGTTCAAAAGGCTAGAC----- | ||
| cjaponica | -TCGAATGGTCTGAGAA---------CATCTGAGGTAGTATTT-AATGTTGTTGACGGCTCGGATTGCAAAAGTCCACAACATTTCTAGTACCTCAAATGTTCAAGACGGCCATTGA--- | ||
| cbrenneri | --AAGATTGTCTCAAAGTAA------CATCTGAGGTAGTTTGGAAATGCTGTCGACGC-ATTG-----TGATGTCAACAACATTTCAACTAACTCGGCTGTTTCATGAGATTCTT----- | ||
| ppacificus | ----------CTTCCCGTCGATCCCTCAGTTGAGGTAGTTAAGAATAAGTGATGACCA-TCAG-----AAGTATTCACG-TATTCTCCCTGCCTCCACTGTGTCGGTGGGAGG------- | ||
| cremanei | ACGAAACAGTCTAACAGAAG------CATCTGAGGTAGTTTGT-AATGCTGTCGACGC-ACTG-----TAATGTCTACATCATTTCAACTGCCTCGGCTGTTTTTAGACTTTTGTTTTGT | ||
| ** ********* * ** *** * ** ** * *** *** | |||
| celegans | ..(( ((.(((((.((((.((. ((((((((.(((.. .... ....))).)))))))).)))))).))))).)))).. | 1.000 -23.00 | |
| cbriggsae | ...((((((......(( ((.((((((.((.(((. ((((.(((.(((....... ....))).))).)))).))))).)))))).))))....)))).)).. | 1.000 -27.40 | |
| cjaponica | ...(((((((...((( (((.(((((((.((... ((((((((.(((.((.......))....))).))))))))..)).))))))).)))))).....))))))).. | 1.000 -41.20 | |
| cbrenneri | ((((..((((((....(( ((.(((((.((((...((((((.(((.((((( (... )).)))).))).)))))).)))).))))).))))...)))))))))) | 1.000 -32.50 | |
| ppacificus | ((((((..((((....((((.(((((((...((((((.((((..((.. .... ..))..)))). ))))))..))))))).)))).))))..)))))) | 0.999 -41.30 | |
| cremanei | (((((((((((((...(((( ((.(((((((((.(((. ((((.(((.((((. .... ...)))).))).)))).)))))))))))).))))))))))))...))))))) | 1.000 -40.80 |
| celegans | chromosome:X:16022323:16022397:-1 | intergenic ## {SimpF: WRM0616bB09 -1 fosmid,WRM0619bA05 -1 fosmid,WRM0637bC08 -1 fosmid} ## {MIR: cel-mir-84} |
| cbriggsae | chromosome:chrX:762819:762918:-1 | Opposite_strand|Intronic_coding|NM_001095669 ## Same_strand|Intronic_coding|NM_001122840 ## {MIR: cbr-mir-84} |
| cjaponica | chromosome:chrUn:45390501:45390606:-1 | intergenic |
| cbrenneri | chromosome:chrUn:19113985:19114085:1 | Same_strand|Intronic_coding|NM_001030940 ## Opposite_strand|Intronic_coding|NM_007735 |
| ppacificus | chromosome:chrUn:104927866:104927961:1 | Same_strand|Intronic_coding|NM_016621 ## Opposite_strand|Intronic_coding|NM_004099 |
| cremanei | chromosome:chrUn:128707146:128707252:1 | Same_strand|Intronic_coding|NM_212504 |
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