confident miRBase miRNAs
miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK (30 loci)
cel-mir-60
| absolute | CE1 |
| cel-mir-60 5arm | 1 |
| cel-mir-60 3arm | 778 |
| normalized | CE1 |
| cel-mir-60 5arm | 0.001 |
| cel-mir-60 3arm | 0.543 |
sblock12 (miRBase cel-mir-60) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-60 | 0.001 | no | no | 0.22/0.39 | 18/25/0.99 | 0.0 0.0 | 0.0 0.0 | 1 757 | 0 0 | 1 1 | 0 0 | 21 16 | 3 5 | 5arm 3arm | 1 1 | nd nd | 0.09 0.09 | 1 1 | 779 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------AUUAUGC------------------------------------- | 765 | miR-60 |
| seed | -------------------------------------------------------------------UUAUGCA------------------------------------ | 5 | novel |
| seed | ----------------------------------------------------------------------UGCACAU--------------------------------- | 5 | novel |
| seed | -----------------------------------------------------------------UAUUAUG-------------------------------------- | 2 | novel |
| seed | ----------------------ACUGGAA--------------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------UAUGCAC----------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------TATTATGCACATTTTCTAGTTC----------------------- | 22 | 757 | |
| ---------------------------------------------------------------------ATGCACATTTTCTAGTTCAA--------------------- | 20 | 5 | |
| ------------------------------------------------------------------ATTATGCACATTTTCTAGTTCA---------------------- | 22 | 4 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAGTT------------------------ | 21 | 3 | |
| ----------------------------------------------------------------ATATTATGCACATTTTCTAGTTC----------------------- | 23 | 2 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAGTTCAAG-------------------- | 25 | 2 | |
| ---------------------AACTGGAAGAGTGCCATAAAAT---C--------------------------------------------------------------- | 23 | 1 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTA--------------------------- | 18 | 1 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAGT------------------------- | 20 | 1 | |
| -------------------------------------------------------------------TTATGCACATTTTCTAGTTC----------------------- | 20 | 1 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAG-------------------------- | 19 | 1 | |
| ------------------------------------------------------------------ATTATGCACATTTTCTAGTTC----------------------- | 21 | 1 | |
| cel-miR-60 | -----------------------------------------------------------------TATTATGCACATTTTCTAGTTCA---------------------- | 23 | - |
| celegans | CTCGAAAACCGCTTGTTCTTGAACTGGAAGAGTGCCATAAAAT---CATGACAA--AGTACGTGATATTATGCACATTTTCTAGTTCAAGACTTGAGAAATCG------- | ||
| cbriggsae | ----GAAACCTCTTGTTCTTGAGCTGGAAAGGTGACATAAAAT---CATGTCCA--AGCACGCGATATTATGCACATTTTCTAGTCCAAGACTTGATTAATAATGGTTTC | ||
| cjaponica | --------------------GAGCTGGAAAAGTGCTATAAAAT---CGAGT-----AATTTACGATATTATGCACATTTTCTAGTTC----------------------- | ||
| cbrenneri | --------------------GAGCTGGAAAGGTGACATAAAAT---CATGTCAG--AGAACGCGATATTATGCACATTTTCTAGTCC----------------------- | ||
| ppacificus | -------------------------GCACGCGTGGCGCAAATTTCGTAGGCCCACTACAAGGCTAAATTATGCGCAGCGGTTCGTGC----------------------- | ||
| cremanei | --------------------GAGCTAGAAAGGTGACATAAAAT---CATGTATA--ACAACGCGATATTATGCACATTTTCTAGACC----------------------- | ||
| * *** *** * * * * ******* ** * * * | |||
| celegans | ..(((......((((.(((((((((((((((((((.((((.(( ((((.... ....)))))).)))))))).)))))))))))))))..))))...))) | 1.000 -34.90 | |
| cbriggsae | ((((((((..((.((((..(((((((((((.(((((.(( (.(((... ...))).))).)))))))).))))))))..))))))..))........)))))) | 0.980 -31.80 | |
| cjaponica | (((((((((((((((.((((.(( ((((. ...)).)))).)))))))).))))))))))) | 1.000 -22.30 | |
| cbrenneri | ..((((((((((((.(((((.(( (.(((... ...))).))).)))))))).))))))))).. | 0.999 -19.10 | |
| ppacificus | ((((((((.((((((((((....((((........))))))))).))))).)))...))))) | 0.998 -22.50 | |
| cremanei | ...(((((((((((.(((((.(( (.(((... ...))).))).)))))))).))))))))... | 1.000 -18.60 |
| celegans | chromosome:II:6328653:6328750:-1 | intergenic ## {SimpF: WRM0617aE11 -1 fosmid,WRM0636aC04 -1 fosmid,WRM0632aH03 -1 fosmid,WRM069bB10 -1 fosmid,WRM0611bE09 -1 fosmid,WRM0615bE03 -1 fosmid} ## {MIR: cel-mir-60} |
| cbriggsae | chromosome:chrII:8572385:8572485:1 | Opposite_strand|Intronic_coding|NM_001047975 ## Same_strand|Intronic_coding|NM_001011629 ## {MIR: cbr-mir-60} |
| cjaponica | chromosome:chrUn:130421823:130421960:1 | intergenic |
| cbrenneri | chromosome:chrUn:49547555:49547692:-1 | Same_strand|Intronic_coding|NM_001010986 |
| ppacificus | chromosome:chrUn:148185760:148185897:-1 | Same_strand|Intronic_coding|NM_002860 |
| cremanei | chromosome:chrUn:132859235:132859372:1 | intergenic |
cel-mir-57
| absolute | CE1 |
| cel-mir-57 5arm | 25 |
| cel-mir-57 3arm | 1 |
| normalized | CE1 |
| cel-mir-57 5arm | 0.017 |
| cel-mir-57 3arm | 0.001 |
sblock13 (miRBase cel-mir-57) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-57 | 0.002 | no | no | 0.48/0.52 | 21/25/0.78 | 0.0 0.0 | 0.3 0.0 | 22 1 | 0 0 | 1 1 | 0 0 | 15 24 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.20 0.14 | 1 1 | 26 | 1 | 3 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------ACCCUGU--------------------------------------------------------------------------------------- | 25 | miR-57 |
| seed | ---------------------------------------------------------------------------------CGAGCUA---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-57 | ---------------------------------TACCCTGTAGATCGAGCTGTGTG--------T--------------------------------------------------------------- | 24 | 16 |
| ---------------------------------TACCCTGTAGATCGAGCTGTGTG--------TT-------------------------------------------------------------- | 25 | 6 | |
| ---------------------------------TACCCTGTAGATCGAGCTGTGTG------------------------------------------------------------------------ | 23 | 3 | |
| --------------------------------------------------------------------------------ACGAGCTAGACTACAAGGTGC--------------------------- | 21 | 1 | |
| celegans | ------------------ATCGACATGCTCGTCTACCCTGTAGATCGAGCTGTGTG--------TTTGAAACAATCATACACGAGCTAGACTACAAGGTGCACGAACAAA---CCGAAGATTTATGAA | ||
| cbriggsae | -------------------GCTCTGAGTTCGTCTACCCTGTAGATCGAGCTGTGTG-------TTCTGAAGT-ATCATACACGAGCTAGACTACTAGGTGAACGATGGAA---TGGAGC--------- | ||
| cbrenneri | ---------------------------------TACCCTGTAGATAGAGCTGTGTG-------TTTGGAATATACCGTACACAAGCTAGACTACAAGGTG---------------------------- | ||
| cjaponica | ------GTTGATCTGCTCGATCCGAACATCGTCTACCCTGTAGATCGAGCTGTGTGTGTGCTATTTCGAAATGATAGAACACACGCTAGACTTCAGGGTGAACGAGATGGATTTGAGAGAAGGTTGGC | ||
| cremanei | CGTAAGTTTGAATATCTCATGACTGTTTTCGTCTACCCTGTAGATCGAGCTGTGTG-------TTTTGAAGTGTTCATACACAAGCTAGACTGCAAGGTGAACGACAAAA---TGAGA---------- | ||
| ************ ********** * *** **** ******** * **** | |||
| celegans | .(((...((.((((.((((.(((((.((.((((.(((( (.(((.....))).))))))))).))))))).)))).)))).)).. .)))........... | 1.000 -32.50 | |
| cbriggsae | (((((...((((((((((..((((.((.((((.(((( (..(((... .))).))))))))).))))))..))))...)))))). .))))) | 1.000 -32.20 | |
| cbrenneri | ((((.(((((....((((.(((( (.(((......))).)))))))))...))))).)))) | 1.000 -22.30 | |
| cjaponica | ((..((((.(((((((((....((((.(((((((.((.((.(((.((((((...(((((.......))))).))))))))).)))).))))))).))))..)))))).)))...))))..)) | 1.000 -51.90 | |
| cremanei | ..............((((((.....((.((((.((((.(((((.((.((((.(((( (..(((.....))).))))))))).))))))).)))).)))).)).) ))))) | 0.934 -33.80 |
| celegans | chromosome:II:7850429:7850527:-1 | intergenic ## {SimpF: WRM0621cG05 -1 fosmid,WRM0613aH06 -1 fosmid,WRM0615dA05 -1 fosmid,WRM0640aC07 -1 fosmid} ## {MIR: cel-mir-57} |
| cbriggsae | chromosome:chrII:5768348:5768436:-1 | Same_strand|Intronic_coding|NM_001011629 ## Opposite_strand|Intronic_coding|NM_001791 ## {MIR: cbr-mir-57} |
| cbrenneri | chromosome:chrUn:125704578:125704716:-1 | Same_strand|Intronic_coding|NM_001098360 ## Opposite_strand|Intronic_coding|NM_063247 |
| cjaponica | chromosome:chrUn:29105267:29105388:-1 | intergenic |
| cremanei | chromosome:chrUn:19014097:19014204:-1 | Opposite_strand|Intronic_coding|NM_001009825 |
cel-mir-72
| absolute | CE1 |
| cel-mir-72 5arm | 305 |
| cel-mir-72 3arm | 4 |
| normalized | CE1 |
| cel-mir-72 5arm | 0.213 |
| cel-mir-72 3arm | 0.003 |
sblock15 (miRBase cel-mir-72) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-72 | 0.001 | no | no | 0.40/0.59 | 19/23/0.98 | 0.0 0.0 | 0.2 0.5 | 253 4 | 0 0 | 1 1 | 0 0 | 16 17 | 1 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.23 0.27 | 2 2 | 309 | 1 | 1 | 2 |
| Member of family miR-73/74 (seed GGCAAGA): cel-mir-74, cel-mir-72, cel-mir-73 |
| reads | miRBase family seed | ||
| seed | --------------------------------GGCAAGA--------------------------------------------------------------------------------------------------------------------------- | 296 | miR-73/74 |
| seed | ---------------------------------GCAAGAU-------------------------------------------------------------------------------------------------------------------------- | 7 | novel |
| seed | --------------------------------------------------------------------------------------------------------------GCUUCGC--------------------------------------------- | 4 | novel |
| seed | ------------------------------------AGAUGUU----------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------CAAGAUG------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------AGGCAAGATGTTGGCATAGCT-------G------------------------------------------------------------------------------------------------------ | 22 | 193 | |
| -------------------------------AGGCAAGATGTTGGCATAGCT-------------------------------------------------------------------------------------------------------------- | 21 | 60 | |
| -------------------------------AGGCAAGATGTTGGCATAGC--------------------------------------------------------------------------------------------------------------- | 20 | 41 | |
| --------------------------------GGCAAGATGTTGGCATAGC--------------------------------------------------------------------------------------------------------------- | 19 | 5 | |
| -------------------------------------------------------------------------------------------------------------AGCTTCGCCACATTCTGCCACG------------------------------- | 22 | 2 | |
| -------------------------------AGGCAAGATGTTGGCATAG---------------------------------------------------------------------------------------------------------------- | 19 | 2 | |
| -------------------------------------------------------------------------------------------------------------AGCTTCGCCACATTCTGCCAC-------------------------------- | 21 | 2 | |
| ---------------------------------GCAAGATGTTGGCATAGCT-------G------------------------------------------------------------------------------------------------------ | 20 | 1 | |
| -----------------------------------AAGATGTTGGCATAGCT-------GAA---------------------------------------------------------------------------------------------------- | 20 | 1 | |
| --------------------------------GGCAAGATGTTGGCATAGCT-------GA----------------------------------------------------------------------------------------------------- | 22 | 1 | |
| --------------------------------GGCAAGATGTTGGCATAGCT-------------------------------------------------------------------------------------------------------------- | 20 | 1 | |
| cel-miR-72 | -------------------------------AGGCAAGATGTTGGCATAGCT-------GA----------------------------------------------------------------------------------------------------- | 23 | - |
| celegans | -------------AGGTCCCGT--CAGAGCTAGGCAAGATGTTGGCATAGCT-------GAATGATCGCTATAAC---------------------------AACTATCAGCTTCGCCACATTCTGCCACGCACTGATGTGAGGACCT-------------- | ||
| ppacificus | --------------GGTCGCGTATCCGAGTGAGGCAAGATGTTGGCATAGCTGATGGTCGAATTGAAGCAAT-----------------------------------TCCGCTCTGCCACATGTAGCCACGCACGGCCGACC-------------------- | ||
| cjaponica | CTAATTGTTCACGCGGACCCGT--CAGAGCTAGGCAAGATGTTGGCATAGCT-------GAACTAAAACCGCCGGCGTC-----------------------AGGTATCAGCTTCGCCACATTCTGCCAAGCGCTGCACGTTGGCGGTCTCAGAATTGTAAG | ||
| cbrenneri | --------------------GT--TAGAGCTAGGCAAGATGTTGGCATAGCT-------GAATGAAATTCTCGATTATCTCCTTTTTTCGACAAAAGGGAGAGTCACTCAGCTTCGCCACATATTGCCACGCGCTGAT------------------------ | ||
| cremanei | -------------------------------AGGCAAGATGTTGGCATAGCT-------GAATGCAATTT--------------------------------GGCGCTCAGCTCGGCCACATACTGCCA--------------------------------- | ||
| ********************* *** ** *** ******* **** | |||
| celegans | ((((((((( (((.((..((((..((((.(((..(((( ((.............. .....))))))..)))))))..))))..)).))))))...)))))) | 1.000 -43.21 | |
| ppacificus | (((((.....(((.(((.(((...(((.(((((.(((.((..((.........))... )).))).))))))))...))).))).))).))))) | 0.907 -32.50 | |
| cjaponica | ....(((....(((.(((..(( (((.(((.((((..(((.((((..(((( (((((.....((....)).. .))).))))))..)))))))..)))).))).))).))))).)))....)))......... | 0.996 -46.40 | |
| cbrenneri | (( (((.((..(((((.(((.((((..(((( ((.(((............((((((((((.....)))))))))).))).))))))..))))))).)))))..)).))))) | 0.872 -43.82 | |
| cremanei | .((((..(((.((((..(((( ((.(((..... .))).))))))..)))))))..)))). | 1.000 -29.00 |
| celegans | chromosome:II:2452839:2452937:1 | intergenic ## {MIR: cel-mir-72} |
| ppacificus | chromosome:chrUn:125766809:125766901:-1 | Same_strand|Intronic_coding|NM_001122594 |
| cjaponica | chromosome:chrUn:88945962:88946091:1 | intergenic |
| cbrenneri | chromosome:chrUn:87557321:87557429:1 | intergenic |
| cremanei | chromosome:chrUn:30735444:30735582:-1 | Opposite_strand|Intronic_coding|NM_182266 |
cel-mir-85
| absolute | CE1 |
| cel-mir-85 5arm | 1 |
| cel-mir-85 3arm | 131 |
| normalized | CE1 |
| cel-mir-85 5arm | 0.001 |
| cel-mir-85 3arm | 0.092 |
sblock17 (miRBase cel-mir-85) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-85 | 0.001 | no | no | 0.27/0.35 | 20/25/0.91 | 0.0 0.0 | 0.0 0.0 | 1 115 | 0 0 | 1 1 | 0 0 | 19 17 | 5 10 | 5arm 3arm | 1 1 | nd nd | 0.09 0.17 | 1 1 | 132 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------------------------ACAAAGU---------------------------------- | 118 | miR-85 |
| seed | --------------------------------------------------------------------------------------------------------------U--ACAAAG----------------------------------- | 11 | novel |
| seed | ------------------------------------------------------------------------------------------------------------------CAAAGUA--------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------------------------------------------------------------------AGUAUUU------------------------------ | 1 | novel |
| seed | --------------------CGAUUUU------------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-85 | --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGTGC------------------ | 24 | 115 |
| -------------------------------------------------------------------------------------------------------------TT--ACAAAGTATTTGAAAAGTCGTGC------------------ | 25 | 11 | |
| -------------------CCGATTTTTCAA-----------------------------------TAGTTTGAAAC----------------------------------------------------------------------------- | 23 | 1 | |
| --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGTGCT----------------- | 25 | 1 | |
| --------------------------------------------------------------------------------------------------------------------AAGTATTTGAAAAGTCGTGC------------------ | 20 | 1 | |
| --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGTG------------------- | 23 | 1 | |
| --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGT-------------------- | 22 | 1 | |
| -----------------------------------------------------------------------------------------------------------------ACAAAGTATTTGAAAAGTCGTGC------------------ | 23 | 1 | |
| celegans | AGAATTTTGGCGTCGGAGCCCGATTTTTCAA-----------------------------------TAGTTTGAAACCAGTGTAC-----------ACATA---AATGGTT--ACAAAGTATTTGAAAAGTCGTGCTCTGAAAATGAATTCTT- | ||
| cbriggsae | -------------------CCGCTTTTTCAG-----------------------------------TAGTTTGAAACCAGAGATG-----------ATA-----GTTGGTT--ACAAAGTATTTGAAAAGGCGT-------------------- | ||
| cbrenneri | ----------------GTCCCATATCTCAAAAGTGGGCGGAGCAAGATAGTTGTCAATTGCAAACTTGTTCCAAATTCAATTCTG-----------ACAAAGTTTGCAGTT-GACAACTTTTTTCTAGCTCCGCCCACTTTTGAGATGGGGGAC | ||
| cjaponica | -------------------CCGGCTTTTCAT-----------------------------------TTGTTTGAAACCAGCCAAG-----------ACGAGTATGGTGGTT--ACAAAGTATTTGAAAAGTCGT-------------------- | ||
| ppacificus | -------------------AAGTGTCGTGAA-----------------------------------AGATTTTGAATGAACGCCAGATGTTTTACTGCAAA---TGTGGTCATACAAAGTATTTCACGGCACGT-------------------- | ||
| cremanei | ----------------AGCCCGTCTTTCCAA-----------------------------------TATTTTGAAACCAGTACTC-----------ATGCA---AATGGTT--ACAAAGTATTCGAAAAGGCGTGCT----------------- | ||
| * * * * * ** **** * ** ** | |||
| ------------------------------------ ------------------- ----- ------- ---------------------------------------- --<<< | F49E12.8 F49E12.8 F49E12.8 | ||
| celegans | (((((((.....(((((((.((((((((((( ((.((((.((((((((... .))). ..))))) .)))).)))).))))))))).)))))))....))))))). | 1.000 -39.90 | |
| cbriggsae | .((((((((((( ((.((((.((((((..... ... .)))))) .)))).)))).))))))))). | 1.000 -22.30 | |
| cbrenneri | (((((.(((((((((((((((((((((.(((.((((((((((((((((((((((..((......))..) )))).)))))))))) )))))))....))).))))))))))))))))))))).))))) | 1.000 -80.60 | |
| cjaponica | .((((((((((. .((((((.(((((.(((.. .......)))))))) .)))).))..)))))))))). | 1.000 -23.60 | |
| ppacificus | ..(((((((((( (.((((((.((((.((.((..(((......))).. )))).)))).)))))).))))))))))).. | 0.999 -29.40 | |
| cremanei | (((.((((((((.(( (((((((.(((((...... ..... ..))))) .))))))))).)))).)))).))) | 1.000 -23.22 |
| celegans | chromosome:II:8393487:8393588:1 | Opposite_strand|Intronic_coding|F49E12.8|F49E12.8 ## F49E12.8|protein_coding|F49E12.8|F49E12.8 [Source:RefSeq_peptide;Acc:NP_495765] ## {SimpF: WRM061cH06 1 fosmid,WRM0639cA01 1 fosmid,WRM0637aE12 1 fosmid,WRM063cE11 1 fosmid,WRM069dB01 1 fosmid,WRM0639bA04 1 fosmid,F49E12.8 1 Expression_profile,WRM0631cF05 1 fosmid,WRM0640aC08 1 fosmid,WRM0619bH02 1 fosmid} ## {MIR: cel-mir-85} |
| cbriggsae | chromosome:chrII:3615900:3616041:-1 | Same_strand|Intronic_coding|NM_001111027 ## Opposite_strand|Intronic_coding|NM_063364 ## {MIR: cbr-mir-85} |
| cbrenneri | chromosome:chrUn:146993383:146993508:-1 | Opposite_strand|Intronic_coding|NM_001038367 ## Same_strand|Intronic_coding|NM_060847 |
| cjaponica | chromosome:chrUn:39526936:39527077:1 | Opposite_strand|Intronic_coding|NM_063364 |
| ppacificus | chromosome:chrUn:171896092:171896233:1 | Opposite_strand|Intronic_coding|NM_001039484 ## Same_strand|Intronic_coding|NM_018830 |
| cremanei | chromosome:chrUn:7600986:7601055:1 | Opposite_strand|Intronic_coding|NM_001047948 |
cel-mir-35
| absolute | CE1 |
| cel-mir-35 5arm | 1 |
| cel-mir-35 3arm | 1568 |
| normalized | CE1 |
| cel-mir-35 5arm | 0.001 |
| cel-mir-35 3arm | 1.095 |
sblock18 (miRBase cel-mir-35) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-35 | 0.001 | no | no | 0.48/0.60 | 18/26/0.96 | 0.0 0.0 | 0.0 0.0 | 1 1332 | 0 0 | 1 1 | 0 0 | 20 15 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.13 0.09 | 1 1 | 1569 | 1 | 1 | 1 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------CACCGGG---------------------------------------------------- | 1540 | miR-35/36/38/39/40/41 |
| seed | -------------------------------------------------------------------------------------ACCGGGU--------------------------------------------------- | 18 | miR-42 |
| seed | ----------------------------------------------------------------------------------------GGGUGGA------------------------------------------------ | 8 | novel |
| seed | --------------------------------------------------------------------------------CUAUCAC-------------------------------------------------------- | 2 | novel |
| seed | -------------------------------------UGCUGGU--------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-35 | -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCAGT-------------------------------------- | 22 | 1332 |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCAG--------------------------------------- | 21 | 135 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGC----------------------------------------- | 19 | 53 | |
| ------------------------------------------------------------------------------------CACCGGGTGGAAACTAGCAGT-------------------------------------- | 21 | 15 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCAGTG------------------------------------- | 23 | 14 | |
| ---------------------------------------------------------------------------------------CGGGTGGAAACTAGCAGT-------------------------------------- | 18 | 8 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAG------------------------------------------ | 18 | 3 | |
| -----------------------------------------------------------------------------------TCACCGGGTGGAAACTAGCA---------------------------------------- | 20 | 3 | |
| ------------------------------------------------------------------------------------CACCGGGTGGAAACTAGCA---------------------------------------- | 19 | 2 | |
| -------------------------------------------------------------------------A------CTATCACCGGGTGGAAACTAGCAGT-------------------------------------- | 26 | 2 | |
| ------------------------------------------------------------------------------------CACCGGGTGGAAACTAGCAG--------------------------------------- | 20 | 1 | |
| ------------------------------------TTGCTGGTTTCTTCCACAGTGGT------------------------------------------------------------------------------------ | 23 | 1 | |
| celegans | ----------------TCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCC-ATTAGAA------CTATCACCGGGTGGAAACTAGCAGTGGCTC---GAT--------CTT----TTCC-------- | ||
| cremanei | --TCCTGCTACTTTATTCCCTGACGAGG--GGAACCGTGCTGGTTTCGACCTCGGTAATAGGTCCATATATGAGAAGAACCTATCACCGGGTGGAAACTGGTACGGGTCCCCGAGT--------CAGTCTATTTCGAAAAGGA | ||
| cbriggsae | -----------------GATAGCTTGGATCGGACCTCTGCTGGTTTCTGCCGCAGTGATATTCCAACGTAGTGG------TTATCACCGGGTGAAAACTGGTAGAGGTCC---GAT--------CCAGACAAGTC-------- | ||
| cjaponica | GATATTCTTGCT-----CTTTCTCCAGCTCGGACCTCCGCTGGTTTCT-TTTCGTTGATACGATTTTAATCATG------TTATCACCGGGTTGAAACTGGTAGAGGTCC---GACGCTGGAGGCCTCTCATATC-------- | ||
| cbrenneri | ------CCTGCTATATTCGTCGACTGGACCGGACCTCTGCCAGTTTTTACCGCTGTGATACTCCAA-GAGACGG------TTATCACCGGGTGAAAATTGGTAGAGGTCC---GGT--------CC-----TTTC-------- | ||
| * * * ** **** * * ** *********** *** * * * ** * * * | |||
| ----- -------------------------------------------------- ------- ------------------------------ --- --- ---- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | ....(((..(((((((((((((((((((((((.((.(.((((((.(((.. ....))) .)))))).))).)))))))))))))))))) ))) )). .))) | 1.000 -54.30 | |
| cremanei | ((((.............(((((..(( (((.((((((..(((((.(((.((((.((((((...............)))))).))))))).)))))..)))))).)))))..)) )))............)))) | 0.935 -61.87 | |
| cbriggsae | ......(((((((((((((((((..((((..(((...((((((..(((......))) .))))))..)))..))))..)))))))))) ))) ))))....... | 0.994 -54.30 | |
| cjaponica | ............ ...(((((((((((((((((..((((((((. .((((.(((((.(((....)))... .))))).))))..))))))))..))))))) )).))))))))........... | 0.974 -52.40 | |
| cbrenneri | ...............((..((((((((((((((((((((((((((...((((((..((.. .....)) .))))))..))))))))))))))))))))) ))) )) ..)) | 0.962 -58.20 |
| celegans | chromosome:II:11537524:11537620:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {MIR: cel-mir-35} |
| cremanei | chromosome:chrUn:26789042:26789172:-1 | intergenic |
| cbriggsae | chromosome:chrX:15333874:15333974:1 | intergenic |
| cjaponica | chromosome:chrUn:117592041:117592160:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613691:41613796:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
cel-mir-36
| absolute | CE1 |
| cel-mir-36 5arm | 10 |
| cel-mir-36 3arm | 100 |
| normalized | CE1 |
| cel-mir-36 5arm | 0.007 |
| cel-mir-36 3arm | 0.070 |
sblock19 (miRBase cel-mir-36) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-36 | 0.001 | no | no | 0.48/0.53 | 19/23/0.87 | 0.0 0.0 | 0.0 0.2 | 8 83 | 0 0 | 1 1 | 0 0 | 19 15 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.18 0.14 | 2 1 | 110 | 1 | 1 | 2 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------CACCGGG-------------------------------------------------- | 99 | miR-35/36/38/39/40/41 |
| seed | --------------------------------GCCAA-UU--------------------------------------------------------------------------------------------- | 10 | novel |
| seed | -----------------------------------------------------------------------------ACCGGGU------------------------------------------------- | 1 | miR-42 |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-36 | ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCATG------------------------------- | 22 | 63 |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCAT-------------------------------- | 21 | 20 | |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGC---------------------------------- | 19 | 14 | |
| -------------------------------CGCCAA-TTTTCGCTTCAGTGCT------------------------------------------------------------------------------- | 22 | 8 | |
| -------------------------------CGCCAA-TTTTCGCTTCAGTGC-------------------------------------------------------------------------------- | 21 | 2 | |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCA--------------------------------- | 20 | 1 | |
| ---------------------------------------------------------------------------TCACCGGGTGAAAA-----TTCGCATGG------------------------------ | 23 | 1 | |
| ----------------------------------------------------------------------------CACCGGGTGAAAA-----TTCGCATG------------------------------- | 21 | 1 | |
| celegans | ------CACCGCTGTCGGGG------AACCGCGCCAA-TTTTCGCTTCAGTGCTAGACCATCCAAAGTGTC--TATCACCGGGTGAAAA-----TTCGCATGGGTCCCCGACGCGGA---------------- | ||
| cremanei | GAAAGGTAAGTTTAACAGGTCCCCATGACCTTGGTAGTTTTCCGCCGCAGTGATATACCATCAATCAAAACGATATCACCGGGTGAAAAACTACCAAGGTCGGGTCACCTGTCCTTTT--------------- | ||
| cbriggsae | -----CCATTCCAATTGAAACCTTCGGACCATTGTGAATTTTTGCTGCGGTGTTACAAC-----TAACATCTGTATCACCGGGTGAAAA-----TTCGCAATGGT--CCGATGGGTATTCATGTGGAGCCTGG | ||
| cjaponica | --------ACCATGACGGG-------AACCGCGCTGG-TTTCTACCGCAGTGATACGCAATCAACAAGTCCTCTATCACCGGGTGGAAA-----CTAGCTCGGGTCCCCGATTGGT----------------- | ||
| cbrenneri | ---------TTGCGTAGGGG------AACCAAGCTAG-TTCTTACCGCGGTGCTACAACAAGCATAACATC--TAACACCGGGTAAAAA-----CTAGCTCGGGTCCCCCTTGCAA----------------- | ||
| *** ** * * *** ** * ** ******** *** * *** ** | |||
| ----- -------------- ----------- --------------------------------- ---------------- ----------------------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | ..((((.((((((( (.(((.((.(( (((((((((..(((.((((((.......).))) )).))).))))))))) )).)).))).)))))))))))). | 1.000 -50.30 | |
| cremanei | ((((((........((((((..((.((((((((((((((((.((((...(((((((................)))))))..)))).))))))))))))))))))..)))))))))))) | 0.997 -51.19 | |
| cbriggsae | ((((((((..(((((((((((((((((((((((((((..((.(((((.((((.. .......)))).)))))))..)))) ))))))))))) )))).)))).))))..)))))..))) | 1.000 -60.30 | |
| cjaponica | ((((....((( (.(((.((((( ((((((((...((((((..................))))))..)))))))) ))))).))).))))....)))) | 0.994 -41.87 | |
| cbrenneri | .((((..(((( (.((.(((((( ((.(((((.(((((................... ...)))))))))).)) )))))).)).)))))..)))). | 0.969 -43.35 |
| celegans | chromosome:II:11537629:11537725:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {MIR: cel-mir-36} |
| cremanei | chromosome:chrUn:8778361:8778478:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
| cbriggsae | chromosome:chrII:7535760:7535875:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## {MIR: cbr-mir-36} |
| cjaponica | chromosome:chrUn:117591915:117592009:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613587:41613679:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
cel-mir-37
| absolute | CE1 |
| cel-mir-37 5arm | 5 |
| cel-mir-37 3arm | 1975 |
| normalized | CE1 |
| cel-mir-37 5arm | 0.003 |
| cel-mir-37 3arm | 1.380 |
sblock20 (miRBase cel-mir-37) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-37 | 0.001 | no | no | 0.52/0.67 | 18/23/0.97 | 0.8 0.0 | 0.4 0.0 | 5 1791 | 0 0 | 1 1 | 0 0 | 18 16 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.26 0.27 | 3 2 | 1980 | 1 | 1 | 2 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------CACCGGG----------------------------------------------- | 1942 | miR-35/36/38/39/40/41 |
| seed | ---------------------------------------------------------------------------ACCGGGU---------------------------------------------- | 18 | miR-42 |
| seed | ------------------------------------------------------------------------------GGGUGAA------------------------------------------- | 13 | novel |
| seed | -----------------------------GUGGGUG-------------------------------------------------------------------------------------------- | 4 | novel |
| seed | -------------------------------------------------------------------------UCACCGG------------------------------------------------ | 2 | novel |
| seed | ---------------------------------GUG----UCCG------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-37 | -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCAGT----------------------------- | 22 | 1791 |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCAG------------------------------ | 21 | 97 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGC-------------------------------- | 19 | 36 | |
| --------------------------------------------------------------------------CACCGGGTGAA----CACTTGCAGT----------------------------- | 21 | 16 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCAGTG---------------------------- | 23 | 15 | |
| -----------------------------------------------------------------------------CGGGTGAA----CACTTGCAGT----------------------------- | 18 | 13 | |
| ----------------------------TGTGGGTG----TCCGTTGCGGTGCT-------------------------------------------------------------------------- | 22 | 3 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTGCA------------------------------- | 20 | 2 | |
| -------------------------------------------------------------------------TCACCGGGTGAA----CACTTG--------------------------------- | 18 | 1 | |
| ------------------------------------------------------------------------ATCACCGGGTGAA----CACTTGCAG------------------------------ | 22 | 1 | |
| --------------------------------------------------------------------------CACCGGGTGAA----CACTTGCAG------------------------------ | 20 | 1 | |
| ----------------------------TGTGGGTG----TCCGTTGCGGTGC--------------------------------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------------------ATCACCGGGTGAA----CACTTGCAGT----------------------------- | 23 | 1 | |
| --------------------------------GGTG----TCCGTTGCGGTGCTA------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------------------------------------------------CACCGGGTGAA----CACTTGC-------------------------------- | 18 | 1 | |
| celegans | ----------TAGAAACCCTTGGACCAGTGTGGGTG----TCCGTTGCGGTGCTACA-TTCT-CTAATCTGTATCACCGGGTGAA----CACTTGCAGTGGTCCT-----------CGTGGTTTCT-- | ||
| cremanei | TCCGATTGGTTGAAAGAGCCAGAACCTATACCGGTTTAACTTCGTGGTGATATGACACATATTACATTCTTTATCACCGGGAGTA---AAACTGGTATAGGATCTGCGACTCGCTGATTGGA------ | ||
| cbriggsae | -CCATTCCAATTGAAACCTTCGGACCATTGTGAATT----TTTGCTGCGGTGTTACA--ACT-AACATCTGTATCACCGGGTGAA----AATTCGCAATGGTCCGATGGGTATTCATGTGGAGCCTGG | ||
| cbrenneri | -------GGCCGGA-----TCGGACCTATGCTGGTT----TTCACCGCGGT--TATACTTCTAACAATAATTATCACCGGGTTAA----AACTTGCAGAGGTCCG----------GTCCGGCC----- | ||
| cjaponica | -------GTCCAGAA----TTAGACACTGGCTGGTA----TCCGCGATGGTGTTACACTACT-GTAA--TGTATCACCGGGTGGA----AACTTGCAAGTGTCTC---------CAACTGGAT----- | ||
| ppacificus | ---------TCTGAGTCCCTTCGATCGCCTCTGATC-------ACTACGATGAAACTGAGATAACGA--GTTTTCACCGGGTGAACAGAAGCTGTTGAAGAT--------------ATCGGA------ | ||
| * * * * * * * * ******** * * ** | |||
| ----- -------------------------- ----------------- ---- ---------------------- ---------------- ---------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | .(((((((...((((((.((..(((( (.((...(((((.(((( .... ......)))).)))))..)).) ))))..)).)))))). ...))))))) | 1.000 -43.40 | |
| cremanei | ((((((..((.....(((.((((.(((((((((((((.(((((.((((((((...................))))))))))))). ))))))))))))).))))...)))))..)))))) | 1.000 -51.31 | |
| cbriggsae | ((((((((..((((((((((((((((((((((((( ((..((.(((((.(((( ... ......)))).)))))))..)) ))))))))))))))))).)))).))))..)))))..))) | 1.000 -60.30 | |
| cbrenneri | ((((((( ((((((((.(((.(((( ((.(((.(((( .(((.((........)).))).))))))).)) )))).))).))))))) )))))))) | 1.000 -51.90 | |
| cjaponica | ((((((.. ..(((((((.((.(((. (((((..(((((.((((..... .... )))).))))).))))) .))).)).))))))). ...)))))) | 1.000 -40.00 | |
| ppacificus | (((((....(((((((.((.((((.(( (((.((.(((((((.........) )))).)).))))))).)))).)).))))))).. .))))) | 1.000 -30.60 |
| celegans | chromosome:II:11537752:11537846:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {MIR: cel-mir-37} |
| cremanei | chromosome:chrUn:8778754:8778872:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
| cbriggsae | chromosome:chrII:7535760:7535875:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## {MIR: cbr-mir-36} |
| cbrenneri | chromosome:chrUn:47823952:47824042:-1 | intergenic |
| cjaponica | chromosome:chrUn:117591227:117591318:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| ppacificus | chromosome:chrUn:171595123:171595212:-1 | intergenic ## {Repeats: (GA)n 2 38 -1 class=Simple_repeat} ## {SimpF: trf} |
cel-mir-39
| absolute | CE1 |
| cel-mir-39 5arm | 10 |
| cel-mir-39 3arm | 3387 |
| normalized | CE1 |
| cel-mir-39 5arm | 0.007 |
| cel-mir-39 3arm | 2.366 |
sblock21 (miRBase cel-mir-39) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-39 | 0.001 | no | no | 0.38/0.53 | 18/23/0.99 | 0.0 0.0 | 0.0 0.0 | 10 3177 | 0 0 | 1 1 | 0 0 | 14 11 | 7 8 | 5arm 3arm | 1 1 | nd nd | 0.10 0.14 | 1 1 | 3397 | 1 | 1 | 2 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------CACCGGG-------------------------------- | 3352 | miR-35/36/38/39/40/41 |
| seed | ---------------------------------------------------------------ACCGGGU------------------------------- | 19 | miR-42 |
| seed | ------------------------------------------------------------------GGGUGUA---------------------------- | 15 | novel |
| seed | -------------------GCU--GAUU------------------------------------------------------------------------- | 10 | novel |
| seed | -----------------------------------------------------------------CGGGUGU----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-39 | -------------------------------------------------------------TCACCGGGTGTAAATCAGCTTG------------------ | 22 | 3177 |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGCTT------------------- | 21 | 100 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGCTTGG----------------- | 23 | 51 | |
| --------------------------------------------------------------CACCGGGTGTAAATCAGCTTG------------------ | 21 | 19 | |
| -----------------------------------------------------------------CGGGTGTAAATCAGCTTG------------------ | 18 | 15 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGC--------------------- | 19 | 11 | |
| ------------------AGCT--GATTTCGTCTTGGTAAT------------------------------------------------------------ | 21 | 10 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAGCT-------------------- | 20 | 7 | |
| -------------------------------------------------------------TCACCGGGTGTAAATCAG---------------------- | 18 | 6 | |
| ----------------------------------------------------------------CCGGGTGTAAATCAGCTTG------------------ | 19 | 1 | |
| celegans | ----TATACCGAGAGCCCAGCT--GATTTCGTCTTGGTAAT-AAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTC------- | ||
| cbriggsae | CAGAGATGCAGGGAGCCCAACT-GGTTCTCACTGCAGTGAT-AAGCT-ATGTTACAGTCTATCACCGGGTGAAAAACGGTTAGGCTCTTTAAGCATCTCTG | ||
| cjaponica | --TCGAGCCCGGGACCCCAGCTAGGTGCTCACCGCAGTGAT-ACGCCCTTGT----CGTTATCACCGGGTGAAAATCAGCTAGGGTCCCGTGGA---TCGA | ||
| cbrenneri | ----------------CTAGCT-GATTTCAACCACGGTAAT-AAGCTCCATAGATAGCCTATCACCGGGTGGAAATCAGTTAG------------------ | ||
| ppacificus | ------TCTGAGTCCCTTCGATCGCCTCTGATCACTACGATGAAACTGAGATAACGAGTTTTCACCGGGTGAACAGAAGCTG-----TTGAAGATATCGGA | ||
| cremanei | --GAGATCCAGAGAGCCCAACT-GTTTCTTTCCCCGGTAAT-AAACTTCAACAC--GACTATCACCGGGTATGAATCAGTTAGGCTCTTCTGGTATCTT-- | ||
| * ** * * * ********* * * * | |||
| ----- ------------------ ----------------- ---------------------------------------------------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | .(((((.((((((.(((( (((((((.((((((.(( ((.((((....)))).)))).)))))))).))))))))).))))))))))). | 1.000 -43.30 | |
| cbriggsae | (((((((((((((((((.(((( (.((.(((((...((((( (..(( .......))..))))))..))))).)).))))).))))))))..))))))))) | 1.000 -45.00 | |
| cjaponica | ((((.((((((((((.((((.(((..(((((...((((( (((....... ))).)))))..)))))..))))))).)))))))).)). )))) | 1.000 -46.90 | |
| cbrenneri | (((((( ((((((.(((.((((.(( (.(((........))).))).))))))).)))))))))))) | 1.000 -29.70 | |
| ppacificus | (((((....(((((((.((.((((.(((((.((.(((((((.........))))).)).))))))).)))).)).) ))))))...))))) | 1.000 -30.60 | |
| cremanei | (((((((((((((((.(((( (.(((....((((((.(( (........... ...))).))))))...))).))))).)))))).)))).))))) | 1.000 -39.74 |
| celegans | chromosome:II:11538005:11538091:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {SimpF: Y62F5A.D 1 Expression_profile} ## {MIR: cel-mir-39} |
| cbriggsae | chromosome:chrII:7536042:7536139:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## {MIR: cbr-mir-39} |
| cjaponica | chromosome:chrUn:117591560:117591650:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613238:41613364:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
| ppacificus | chromosome:chrUn:171595123:171595212:-1 | intergenic ## {Repeats: (GA)n 2 38 -1 class=Simple_repeat} ## {SimpF: trf} |
| cremanei | chromosome:chrUn:8778591:8778683:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
cel-mir-44
| absolute | CE1 |
| cel-mir-44 5arm | 19 |
| cel-mir-44 3arm | 454 |
| normalized | CE1 |
| cel-mir-44 5arm | 0.013 |
| cel-mir-44 3arm | 0.317 |
sblock25 (miRBase cel-mir-44) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-44 | 0.001 | no | no | 0.39/0.58 | 18/22/0.98 | 0.0 0.0 | 0.9 0.0 | 19 749 | 0 0 | 1 1 | 0 0 | 15 15 | 7 12 | 5arm 3arm | 1 2 | nd nd | 0.10 0.10 | 2 1 | 927 | 1 | 1 | 2 |
| Located in cluster 2: cel-mir-42, cel-mir-43, cel-mir-44 |
| Member of family miR-44/45/61 (seed GACUAGA): cel-mir-61, cel-mir-44, cel-mir-45 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------GACUAGA---------------------------------------- | 902 | miR-44/45/61 |
| seed | -----------------------------UGGAUGU--------------------------------------------------------------------------------------------- | 19 | novel |
| seed | -----------------------------------------------------------------------------------ACUAGAG--------------------------------------- | 5 | novel |
| seed | -------------------------------------------------------------------------------------UAGAGAC------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-44 | ---------------------------------------------------------------------------------TGACTAGAGACACATTCAGCT--------------------------- | 21 | 749 |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCAGC---------------------------- | 20 | 122 | |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCAGCTT-------------------------- | 22 | 27 | |
| ----------------------------CTGGATGTGCTCGTTGGTCAT-------------------------------------------------------------------------------- | 21 | 10 | |
| ----------------------------CTGGATGTGCTCGTTGGTC---------------------------------------------------------------------------------- | 19 | 9 | |
| ----------------------------------------------------------------------------------GACTAGAGACACATTCAGCT--------------------------- | 20 | 4 | |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCA------------------------------ | 18 | 3 | |
| ---------------------------------------------------------------------------------TGACTAGAGACACATTCAG----------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------------------CTAGAGACACATTCAGCT--------------------------- | 18 | 1 | |
| ----------------------------------------------------------------------------------GACTAGAGACACATTCAGC---------------------------- | 19 | 1 | |
| celegans | -------------GAGAAAATGGCCAATCTGGATGTGCTCGTTGGTCATAGACGTCAACACG---AACTGTTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGCTTCTCTA------------ | ||
| cbriggsae | --------------------------ATCTGGATGTGCTCGTTAGTCATAGACG-AATCACACTTGAAAGGTCA-----TATGACTAGAGACACATTCAGCT--------------------------- | ||
| cjaponica | --------------------------ATCTGGGTGTGCTCGTTAGTCATA----TATCCGCA------CGGCTA-TGAGTATGACTAGAGACACATTCAGCT--------------------------- | ||
| cbrenneri | CCAAGGAGACGAAGAGAGAATGGCCGATCTGGATGTGCTCGTTAGTCATAGACG-ATACACA-GAGAACGGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTC-------------- | ||
| ppacificus | ------------GAGTCGCAGCCCCGCTCTGGATGTG-----TGATCTTGGTCGTATCCGCG--CAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTC--------------- | ||
| cremanei | -GAGTTAGAGAGTGAGAGAATGGCCGATCTGGATGTGCTCGTTAGTCATAGACG-AATCACA-GAAAACAGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTCAAATTGAAGAATTT | ||
| ***** **** * ** * * * * *********************** | |||
| celegans | (((((...((((((.((((((((((((..(((((((((((.((.....) )...))).. ))))))))))).))))))))).))))))...))))).. | 1.000 -42.10 | |
| cbriggsae | ..((((((((((((..(((((((((((. ..(((....)))...))). ))))))))))).))))))))).. | 1.000 -27.60 | |
| cjaponica | ..((((((((((((..(((((((( (..((... .))... ...)))))))))))).))))))))).. | 1.000 -23.90 | |
| cbrenneri | .............((((....((((((.((((((((((((..(((((((((((. ....... .......))). ))))))))))).))))))))).))))))....)))) | 1.000 -42.86 | |
| ppacificus | ((((((..((((((..((((((((( (..((.((((((((..((.( (....))....))..)))))))))).))))))))))..)))))))))))) | 0.999 -44.40 | |
| cremanei | (((((.((...(((((....((((((.((((((((((((..(((((((((((. ....... .......))). ))))))))))).))))))))).))))))....)))))..))....))))) | 0.996 -46.36 |
| celegans | chromosome:II:11889939:11890034:1 | intergenic ## {SimpF: WRM0618bC04 1 fosmid,WRM0615cF06 1 fosmid,WRM061cG08 1 fosmid,WRM0623bB10 1 fosmid,WRM064dE11 1 fosmid} ## {MIR: cel-mir-44} |
| cbriggsae | chromosome:chrII:8049246:8049381:-1 | Same_strand|Intronic_coding|NM_001047975 ## Opposite_strand|Intronic_coding|NM_133464 ## {MIR: cbr-mir-44} |
| cjaponica | chromosome:chrUn:98918995:98919130:-1 | intergenic |
| cbrenneri | chromosome:chrUn:101676729:101676836:1 | Opposite_strand|Intronic_coding|NM_007742 ## Same_strand|Intronic_coding|NM_138591 |
| ppacificus | chromosome:chrUn:21366498:21366592:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
| cremanei | chromosome:chrUn:8362354:8362474:1 | intergenic |
cel-mir-77
| absolute | CE1 |
| cel-mir-77 5arm | 35 |
| cel-mir-77 3arm | 14357 |
| normalized | CE1 |
| cel-mir-77 5arm | 0.024 |
| cel-mir-77 3arm | 10.029 |
sblock26 (miRBase cel-mir-77) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-77 | 0.003 | no | no | 0.44/0.58 | 18/25/0.99 | 0.0 0.0 | 1.5 0.0 | 29 13758 | 0 0 | 1 1 | 0 0 | 23 18 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.17 0.14 | 2 2 | 14392 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------UCAUCAG------------------------------------------- | 14081 | miR-77 |
| seed | -----------------------------------------------------------------------CAUCAGG------------------------------------------ | 142 | novel |
| seed | --------------------------------------------------------------------------CAGGCCA--------------------------------------- | 130 | novel |
| seed | ------------------------AUGGUUG----------------------------------------------------------------------------------------- | 35 | novel |
| seed | ---------------------------------------------------------------------UUCAUCA-------------------------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------------AUCAGGC----------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCC------------------------------ | 21 | 13758 | |
| -------------------------------------------------------------------------TCAGGCCATAGCTGTCCAAA--------------------------- | 20 | 128 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTCCA----------------------------- | 21 | 120 | |
| cel-miR-77 | ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCA----------------------------- | 22 | 85 |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTG--------------------------------- | 18 | 72 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTC------------------------------- | 20 | 65 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAA---------------------------- | 23 | 58 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAAA--------------------------- | 24 | 22 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTCC------------------------------ | 20 | 21 | |
| -----------------------GATGGTTGTGCTCTGAGGAAAT--------------------------------------------------------------------------- | 22 | 18 | |
| -----------------------GATGGTTGTGCTCTGAGG------------------------------------------------------------------------------- | 18 | 11 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGT-------------------------------- | 19 | 11 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAAAT-------------------------- | 25 | 10 | |
| -----------------------GATGGTTGTGCTCTGAGGAA----------------------------------------------------------------------------- | 20 | 5 | |
| --------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCC------------------------------ | 22 | 2 | |
| -----------------------------------------------------------------------CATCAGGCCATAGCTGTCC------------------------------ | 19 | 2 | |
| -----------------------GATGGTTGTGCTCTGAGGAAA---------------------------------------------------------------------------- | 21 | 1 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTC------------------------------- | 19 | 1 | |
| -------------------------------------------------------------------------TCAGGCCATAGCTGTCCAA---------------------------- | 19 | 1 | |
| -------------------------------------------------------------------------TCAGGCCATAGCTGTCCA----------------------------- | 18 | 1 | |
| celegans | GCATCTGCCAAACCGCCCGTTTGGATGGTTGTGCTCTGAGGAAATA--------CGCACAGAATGTCATTTCATCAGGCCATAGCTGTCCAAATTGGTATAGAGTTTG------------ | ||
| cbriggsae | ---------GAGCTGTGAATTTGGATAGCTGTGCTCTGAGGAAATAACAATAGTCACACCCCATGTCATTTCATCAGGCCATAGCTGTCCAAATTT--CTCG-GTTC------------- | ||
| cjaponica | -------GCGCATTTTCAGTTTGGATGACTGTGCTCTGAAGAAATACTGATGATCGTCC---GTAGCATTTCATCAGGCCATAGTTGTCCAAACTG--AGAG-TTGTGTGTTTTTTCACT | ||
| cbrenneri | ---------GAGCCAATAATTTGGATGGCTGTGCCTTGAAGAAATACAGTTA----------GTGTCATTTCATCAGGCCATAGCTGTCCAAATTG--TTAG-GTTCGCCAGTTTTTTAG | ||
| cremanei | AACTGTAAAGAGCTGTTAGTTTGGATGGCTGTGCTCTGAGGAAATACGG-----CTCATAAAATGTCATTTCATCAGGCCATAGCTGTCCAAATTA--TCAATGTTCGAAAGTT------ | ||
| ******* ***** *** ****** * ****************** ******** * * | |||
| celegans | ........(((((((((.(((((((((((((((..((((.(((((. .(((.....))).))))).))))..))))))))))))))).)))...).))))) | 1.000 -35.40 | |
| cbriggsae | ((((((.(((((((((((((((((..((((.(((((.(((..............))).))))).))))..))))))))))))))))) ..)) )))) | 0.998 -41.64 | |
| cjaponica | ((((((((((((((((((..((((((..((((.(((((.((.(((......) )))).))))).))))..))))))..))))))))) )))) ).))))........... | 0.959 -47.20 | |
| cbrenneri | ((((((((((((((((((((((((.(((((.((((((((.... .))).))))).))))).))))))))))))))))) )).) ))))............. | 0.995 -44.30 | |
| cremanei | ((((.....((((((.(((((((((((((((((..((((.(((((..(( (.........)))))))).))))..))))))))))))))))) .))..))))...)))) | 1.000 -39.90 |
| celegans | chromosome:II:12519183:12519282:1 | intergenic ## {SimpF: WRM0641dA02 1 fosmid,WRM063bE08 1 fosmid,WRM0630aA08 1 fosmid,WRM061aD04 1 fosmid,WRM0636cG04 1 fosmid,WRM064cG11 1 fosmid,WRM0629aH07 1 fosmid,WRM0641bG10 1 fosmid} ## {MIR: cel-mir-77} |
| cbriggsae | chromosome:chrII:12520819:12520913:-1 | Opposite_strand|Intronic_coding|NM_077872 ## {MIR: cbr-mir-77-1} |
| cjaponica | chromosome:chrUn:40079835:40079941:1 | Opposite_strand|Intronic_coding|NM_001101877 |
| cbrenneri | chromosome:chrUn:11565280:11565377:-1 | Opposite_strand|Intronic_coding|NM_031741 |
| cremanei | chromosome:chrUn:53585347:53585453:-1 | intergenic |
| Back to summary page | confident miRBase miRNAs: | Page 1 | Next page | Page 8 |
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