candidate miRBase miRNAs
miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK (2 loci)
cel-mir-229
| absolute | CE1 |
| cel-mir-229 5arm | 5010 |
| cel-mir-229 3arm | 19 |
| normalized | CE1 |
| cel-mir-229 5arm | 3.500 |
| cel-mir-229 3arm | 0.013 |
sblock29 (miRBase cel-mir-229) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-229 | 0.001 | no | no | 0.30/0.50 | 18/28/0.47 | 0.0 0.0 | 2.7 0.0 | 4228 12 | 0 0 | 1 1 | 0 0 | 7 5 | 2 20 | 5arm 3arm | 1 1 | nd nd | 0.15 0.13 | 1 1 | 5029 | 1 | 3 | 2 |
| Located in cluster 3: cel-mir-229, cel-mir-64, cel-mir-65, cel-mir-66 |
| Member of family miR-64 (seed AUGACAC): cel-mir-64, cel-mir-229, cel-mir-65, cel-mir-66, cel-mir-63 |
| reads | miRBase family seed | ||
| seed | --------AUGACAC---------------------------------------------------------------------------------------------------- | 4939 | miR-64 |
| seed | ---------UGACACU--------------------------------------------------------------------------------------------------- | 48 | novel |
| seed | ------------CACUGGU------------------------------------------------------------------------------------------------ | 20 | miR-359 |
| seed | ----------------------------------------------------------------------------------------GAAAGGU-------------------- | 15 | novel |
| seed | ---------------------------------------------------------------------------------------AGAAAGG--------------------- | 3 | novel |
| seed | ----------GACACUG-------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | -------AAUGACA----------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------------AAGGUAU------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-229 | -------AATGACACTGGTTATCTTTTCCATCG---------------------------------------------------------------------------------- | 26 | 1878 |
| -------AATGACACTGGTTATCTTTT---------------------------------------------------------------------------------------- | 20 | 1774 | |
| -------AATGACACTGGTTATCTTTTCCATCGT--------------------------------------------------------------------------------- | 27 | 576 | |
| -------AATGACACTGGTTATCTTTTCC-------------------------------------------------------------------------------------- | 22 | 454 | |
| -------AATGACACTGGTTATCTTTTCCATC----------------------------------------------------------------------------------- | 25 | 95 | |
| -------AATGACACTGGTTATCTTTTCCA------------------------------------------------------------------------------------- | 23 | 71 | |
| -------AATGACACTGGTTATCTTT----------------------------------------------------------------------------------------- | 19 | 46 | |
| --------ATGACACTGGTTATCTTTTCCATCG---------------------------------------------------------------------------------- | 25 | 27 | |
| -------AATGACACTGGTTATCTTTTCCAT------------------------------------------------------------------------------------ | 24 | 19 | |
| --------ATGACACTGGTTATCTTTT---------------------------------------------------------------------------------------- | 19 | 16 | |
| -------AATGACACTGGTTATCTT------------------------------------------------------------------------------------------ | 18 | 12 | |
| ---------------------------------------------------------------------------------------AGAAAGGTATCGGGTGTCATAGC----- | 23 | 12 | |
| -------AATGACACTGGTTATCTTTTC--------------------------------------------------------------------------------------- | 21 | 10 | |
| -----------ACACTGGTTATCTTTTCCATCG---------------------------------------------------------------------------------- | 22 | 10 | |
| -----------ACACTGGTTATCTTTTCCATCGT--------------------------------------------------------------------------------- | 23 | 6 | |
| -------AATGACACTGGTTATCTTTTCCATCGTG-------------------------------------------------------------------------------- | 28 | 4 | |
| -----------ACACTGGTTATCTTTTCC-------------------------------------------------------------------------------------- | 18 | 3 | |
| --------ATGACACTGGTTATCTTTTCC-------------------------------------------------------------------------------------- | 21 | 3 | |
| --------------------------------------------------------------------------------------GAGAAAGGTATCGGGTGTCATAGC----- | 24 | 2 | |
| ---------TGACACTGGTTATCTTTT---------------------------------------------------------------------------------------- | 18 | 2 | |
| --------ATGACACTGGTTATCTTTTCCATCGT--------------------------------------------------------------------------------- | 26 | 2 | |
| ---------------------------------------------------------------------------------------AGAAAGGTATCGGGTGTCATAG------ | 22 | 2 | |
| -----------ACACTGGTTATCTTTTCCA------------------------------------------------------------------------------------- | 19 | 1 | |
| -----------------------------------------------------------------------------------------AAAGGTATCGGGTGTCATAGC----- | 21 | 1 | |
| ---------------------------------------------------------------------------------------AGAAAGGTATCGGGTGTC---------- | 18 | 1 | |
| ------CAATGACACTGGTTATCTTTTC--------------------------------------------------------------------------------------- | 22 | 1 | |
| --------------------------------------------------------------------------------------GAGAAAGGTATCGGGTGTCAT-------- | 21 | 1 | |
| celegans | cgccggcAATGACACTGGTTATCTTTTCCATCGTggaatgccccccattgattttttccccttttcggggggaaaaaattggaaacgagaaaggtatcgggtgtcatagccggcg | ||
| ******************************************************************************************************************* | |||
| celegans | (((((((.((((((((.(.((((((((...((((((........)).(..((((((((((((.....))))))))))))..)..)))))))))))).).)))))))).))))))) | 1.000 -57.80 |
| celegans | chromosome:III:2172440:2172554:1 | intergenic ## {MIR: cel-mir-229} |
cel-mir-58
| absolute | CE1 |
| cel-mir-58 5arm | 2 |
| cel-mir-58 3arm | 1698 |
| normalized | CE1 |
| cel-mir-58 5arm | 0.001 |
| cel-mir-58 3arm | 1.186 |
sblock44 (miRBase cel-mir-58) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-58 | 0.001 | no | no | 0.44/0.56 | 18/23/0.34 | 0.0 0.0 0.0 | 0.0 0.0 0.9 | 1 1 1585 | 0 0 0 | 1 1 1 | 0 0 0 | 15 38 10 | 7 -14 10 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.52 0.18 | 3 5 3 | 1700 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------GAGAUCG----------------------------- | 1659 | miR-58 |
| seed | ------------------------------------------------------------------------------AGAUCGU---------------------------- | 27 | novel |
| seed | ---------------------------------------------------------------------------------UCGUUCA------------------------- | 8 | novel |
| seed | ----------------------------------------------------------------------------UGAGAUC------------------------------ | 3 | novel |
| seed | ------------------------------------------------CUUCGUC---------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------------AUCGUUC-------------------------- | 1 | novel |
| seed | ------------------------GCCCUAC---------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGC------------------ | 19 | 1094 | |
| cel-miR-58 | ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCAAT--------------- | 22 | 491 |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCA----------------- | 20 | 56 | |
| -----------------------------------------------------------------------------GAGATCGTTCAGTACGGCA----------------- | 19 | 15 | |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCAA---------------- | 21 | 11 | |
| -----------------------------------------------------------------------------GAGATCGTTCAGTACGGCAAT--------------- | 21 | 10 | |
| --------------------------------------------------------------------------------ATCGTTCAGTACGGCAAT--------------- | 18 | 8 | |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGG------------------- | 18 | 6 | |
| ---------------------------------------------------------------------------ATGAGATCGTTCAGTACGGC------------------ | 20 | 3 | |
| -----------------------------------------------------------------------------GAGATCGTTCAGTACGGC------------------ | 18 | 2 | |
| -----------------------------------------------ACTTCGTCCAATA-------CCATAGGG-------------------------------------- | 21 | 1 | |
| -----------------------TGCCCTACTCTTCGCATCTC-ATC------------------------------------------------------------------ | 23 | 1 | |
| -------------------------------------------------------------------------------GATCGTTCAGTACGGCAAT--------------- | 19 | 1 | |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCAATG-------------- | 23 | 1 | |
| celegans | --------GCTCGTCATATCCATTGCCCTACTCTTCGCATCTC-ATCACTTCGTCCAATA-------CCATAGGGATGAGATCGTTCAGTACGGCAATGGACTGAGCT----- | ||
| cbriggsae | CGTTTGATGCTCGCCATATCCATTGCCCTACTATTCGCATCTC-ATCACTCCAGTATATATATATATATATAAGGATGAGATCGTTCAGTACGGCAATGGAAAGAGCTAAACG | ||
| cbrenneri | --------GCTCGTCATATCCATTGCCCTACTCTTCGCATCTC-ATCACTTCGTCCGCCA-------ATATAAGGATGAGATCGTTCAGTACGGCAATGGAAAGAGC------ | ||
| ppacificus | ---------CTCTTCATTTCGAATG-------------ATCTCTATCCCTTCA--------------GAGTAAGCGAGAGATCGTGCAAAACG--------AAGAG------- | ||
| cremanei | --------GCTCGCCATATCCATTGCCCTACTATTCGCATCTC-ATCACTTCCTCCAGTA-------ATATAAGGATGAGATCGTTCAGTACGGCAATGGAAAGAGC------ | ||
| *** *** ** * ** ***** *** ** * ** * ******** ** *** *** | |||
| +++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | Y67D8A.1.2 Y67D8A.1 Y67D8A.1 | ||
| +++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | Y67D8A.1.1 Y67D8A.1 Y67D8A.1 | ||
| celegans | (((((.....(((((((((.((((...((.((((( (((.((..((.....) )...)).))))))))))...)))).))))))))).))))). | 1.000 -36.80 | |
| cbriggsae | ((((((..((((......(((((((((.((((...((.((((( (((.((...(((((((....))))))).))))))))))))...)))).)))))))))..)))))))))) | 1.000 -43.50 | |
| cbrenneri | ((((......(((((((((.((((...((.((((( (((.(((......... ....)))))))))))))...)))).)))))))))..)))) | 1.000 -35.42 | |
| ppacificus | ((((((.(((...((( ((((((....(((.. ....)))..)))))))))...))).) ))))) | 1.000 -18.60 | |
| cremanei | ((((......(((((((((.((((...((.((((( (((.(((......... ....)))))))))))))...)))).)))))))))..)))) | 1.000 -35.42 |
| celegans | chromosome:IV:3233250:3233341:1 | Same_strand|Intronic_coding|Y67D8A.1.2|Y67D8A.1 ## Y67D8A.1|protein_coding|Y67D8A.1|Y67D8A.1 is orthologous to the human gene PHOSPHORYLASE KINASE, BETA SUBUNIT (PHKB. OMIM:172490), which when mutated leads to glycogen storage disease. [Source: WormBase] ## {SimpF: CEOP4076 1 Operon,oe = 1.19 0 CpG} ## {MIR: cel-mir-58} |
| cbriggsae | chromosome:chrIV:7676279:7676390:-1 | Same_strand|Intronic_coding|NM_007735 ## Opposite_strand|Intronic_coding|NM_033150 ## {MIR: cbr-mir-58} |
| cbrenneri | chromosome:chrUn:166102206:166102296:1 | intergenic |
| ppacificus | chromosome:chrUn:170993603:170993734:-1 | intergenic |
| cremanei | chromosome:chrUn:147063288:147063378:1 | Same_strand|Intronic_coding|NM_126152 |
miRNAknown_lenNOK_cloningOK_randfoldOK (2 loci)
cel-mir-355
| absolute | CE1 |
| cel-mir-355 5arm | 7 |
| normalized | CE1 |
| cel-mir-355 5arm | 0.005 |
block1952 (miRBase cel-mir-355) [miRNAknown_lenNOK_cloningOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-355 | 0.001 | no | no | 0.35/0.39 | 18/21/0.38 | 0.0 | 0.6 | 7 | 0 | 1 | 0 | 16 | 5 | 5arm | 1 | nd | 0.15 | 2 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------UUGUUUU-------------------------------------------------------------------------------------------------------------------- | 7 | miR-355 |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------TTTGTTTTAGCC---------------------------------TGAGCT------------------------------------------------------------------------- | 18 | 5 | |
| -----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTAT----------------------------------------------------------------------- | 20 | 2 | |
| cel-miR-355 | -----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATG---------------------------------------------------------------------- | 21 | - |
| celegans | -----------------GTCAAGAATTGAATGG--TTTGTTTTAGCC---------------------------------TGAGCTATGAGTCATCGGAATATGCATAGCTTCTT-GCTAAAACATGCCAATCAATCTTAATTGACG------------ | ||
| cbriggsae | -----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATGTGTTATT-GCATATTCATAGCTACTT-GCTAAAACATA-------------------------------- | ||
| cjaponica | -----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATGGAAAATT-ATAGCCGCATAGCTTCTT-GCTAAAACAAA-------------------------------- | ||
| cbrenneri | -------CTTATTCTAAGTCATCAAAAGGGAATGGTTTGTTTTAGCC---------------------------------TGAGCTATGTGTTATT-GCACATACATAGCTACTT-GTTAAAACATACCAATCCAATGAACTGACTGCTATTTGGTAAG | ||
| ppacificus | GAATCGCACTAACGAAGAGAAACAACCACCTGGAATTTGTTTTTGCCGGCATCATTTTTGAAATAGCGTAGATGTCGACTTGAGCT-TGAGACAGCACCAGAGCCATTTCTTTTTCGTTCAAACGGATGTTC--------------------------- | ||
| cremanei | -----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATGTGTTATT-GCACATACATAGCTTCTT-GTTAAAACATA-------------------------------- | ||
| ******** *** ****** ** * * *** ** ** * * **** | |||
| celegans | (((((..(((((.((( (.(((((((((. .((((((((..((....)).....))))))))... ))))))))).)))).))))).....))))). | 1.000 -36.50 | |
| cbriggsae | ..(((((((((. ..((((((((((.... )))....))))))).... ))))))))).. | 1.000 -19.60 | |
| cjaponica | .((((((((((. .((((((((....... .......))))))))... )))))))))). | 0.999 -20.14 | |
| cbrenneri | ((((((...((((((((....(((.((((.(((((((((. ..((((((((((.... ....)))))))))).... ))))))))).)))).)))..)))..))))).......)))))) | 0.939 -38.70 | |
| ppacificus | ...(((....((((((((((((.......((((...(((((((.(((((((((.................)))))))......)). .)))))))..)))).....)))))))).))))....)))...... | 0.916 -26.33 | |
| cremanei | ..(((((((((. .(((((((((((.... ....)))))))))))... ))))))))).. | 1.000 -21.20 |
| celegans | chromosome:II:11833462:11833555:-1 | intergenic ## {SimpF: WRM0621aH09 -1 fosmid,WRM0619dG01 -1 fosmid,WRM063dC06 -1 fosmid,WRM0639dF06 -1 fosmid,WRM0623bH09 -1 fosmid} ## {MIR: cel-mir-355} |
| cbriggsae | chromosome:chrII:6505527:6505660:-1 | Opposite_strand|Intronic_coding|NM_020252 ## Same_strand|Intronic_coding|NM_063458 ## {MIR: cbr-mir-355} |
| cjaponica | chromosome:chrUn:90387966:90388099:-1 | intergenic |
| cbrenneri | chromosome:chrUn:105734353:105734469:-1 | intergenic |
| ppacificus | chromosome:chrUn:46891752:46891882:1 | intergenic |
| cremanei | chromosome:chrUn:9664752:9664885:1 | Opposite_strand|Intronic_coding|NM_066413 ## Same_strand|Intronic_coding|NM_062542 |
cel-mir-793
| absolute | CE1 |
| cel-mir-793 3arm | 7 |
| normalized | CE1 |
| cel-mir-793 3arm | 0.005 |
block8564 (miRBase cel-mir-793) [miRNAknown_lenNOK_cloningOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-793 | 0.001 | no | no | 0.36/0.38 | 19/22/0.50 | 0.0 | 0.9 | 7 | 0 | 1 | 0 | 16 | 7 | 3arm | 1 | nd | 0.14 | 2 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------GAGGUAU----------------------------------------- | 7 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------TGAGGTATCTTAGTTAG---------AC--------------------- | 19 | 4 | |
| ----------------------------------------------------------------------------TGAGGTATCTTAGTTAG---------ACAG------------------- | 21 | 3 | |
| cel-miR-793 | ----------------------------------------------------------------------------TGAGGTATCTTAGTTAG---------ACAGA------------------ | 22 | - |
| celegans | -----------------TGGTTGGTA---AAAGTCTGTTTAACTATTGTACA-TCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAG---------ACAGA---CATATACTACAACCA | ||
| cremanei | -----------------TTTTCTGTATCTATAATACGACAGATATTAGAGAT---TGTATAT-------------TCGAGGTATGGAAACTGG---------------------------AAATG | ||
| cbriggsae | ----------------ATTTCAGATA---AAAAACCATCAAAAAAATGCGAT-TCTGCATTT-------------TTGAGGTATTTTCTCTAG----------CAG------------------- | ||
| cbrenneri | -----------------CTGCTTATC---CGGTTCTTCTCCACACCTGTAAC-TGGGTATAT-------------ATGAGGTATCAAGGATTG---------GTGG------------------- | ||
| ppacificus | TGCGTAAGAAGGCCGAGGTACAGAGT---AGAGCTCGAGAAATTATTCCACCGTCTCCTAATTAAAATGAAGAGACGGAGGTATCATTTCTCGAGCTCTAGTACAGAGTCCACCCATTCCATGCA | ||
| * * ******* * * | |||
| celegans | .(((((((( ...(((((((((((((..((((. (((...(((((.....)))))..))).))))..))))))) ))))) )...)))..))))). | 1.000 -33.10 | |
| cremanei | (((((.((.((((((...(((...((((....... .)))).. )))...)))))).)).)) ))).. | 0.992 -12.30 | |
| cbriggsae | .....(((.( (((.(((.(((..((((((((.. ..))))))) ))))))).)))).))).. ... | 1.000 -14.40 | |
| cbrenneri | (((((.((( ((((.((((.....((((..... .)))).... ..)))).)))..)))).) )))) | 0.988 -15.40 | |
| ppacificus | .((((..(((((..((.((((....( ((((((((((((((.((.((.(((((((...((....))...))))))).)).)).)))))))))))))))))))....))...)).))).)))). | 0.975 -46.70 |
| celegans | chromosome:X:13857885:13857976:1 | intergenic ## {SimpF: WRM0640bD03 1 fosmid,WRM0634aB03 1 fosmid,WRM0629cD08 1 fosmid,WRM068bH11 1 fosmid,WRM0628dG05 1 fosmid} ## {MIR: cel-mir-793} |
| cremanei | chromosome:chrUn:118388946:118389077:-1 | intergenic ## {SimpF: trf,trf} |
| cbriggsae | chromosome:chrX:1283957:1284088:1 | Opposite_strand|Intronic_coding|NM_001089360 ## Same_strand|Intronic_coding|NM_007473 |
| cbrenneri | chromosome:chrUn:138702153:138702284:-1 | Opposite_strand|Boundary_coding|NM_062415 |
| ppacificus | chromosome:chrUn:155454787:155454908:-1 | Same_strand|Intronic_coding|NM_073261 ## Opposite_strand|Intronic_coding|NM_001077648 |
miRNAknown_RNA_cloningHIGH_multiarm_DicerOK_randfoldOK (1 loci)
cel-mir-790
| absolute | CE1 |
| cel-mir-790 5arm | 41 |
| cel-mir-790 3arm | 3 |
| normalized | CE1 |
| cel-mir-790 5arm | 0.029 |
| cel-mir-790 3arm | 0.002 |
sblock45 (miRBase cel-mir-790) [miRNAknown_RNA_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-790 | 0.001 | T12E12.9|ncRNA|21ur-1430| | no | 0.52/0.68 | 19/24/0.98 | 0.0 0.7 | 0.0 2.7 | 35 3 | 0 0 | 1 1 | 0 0 | 5 3 | 1 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.18 0.26 | 2 3 | 44 | 1 | 1 | 2 |
| Member of family miR-790/791 (seed UUGGCAC): cel-mir-791, cel-mir-790 |
| reads | miRBase family seed | ||
| seed | -------------------UUGGCAC---------------------------------------------------------------------------- | 41 | miR-790/791 |
| seed | --------------------------------------------------------------GGCGUUA--------------------------------- | 2 | novel |
| seed | -------------------------------------------------------------CGGCGUU---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-790 | ------------------CTTGGCACTCGCGAACACCGCG-------------------------------------------------------------- | 22 | 35 |
| ------------------CTTGGCACTCGCGAACACCGC--------------------------------------------------------------- | 21 | 5 | |
| -------------------------------------------------------------CGGCGTTAGCTCTGTGTCAAACC------------------ | 23 | 1 | |
| ------------------CTTGGCACTCGCGAACACCGCGAT------------------------------------------------------------ | 24 | 1 | |
| ------------------------------------------------------------GCGGCGTTAGCTCTGTGTC----------------------- | 19 | 1 | |
| -------------------------------------------------------------CGGCGTTAGCTCTGTGTCAAA-------------------- | 21 | 1 | |
| celegans | -------------GCCGGCTTGGCACTCGCGAACACCGCGATTT-CACTTATAAC---TCGCGGCGTTAGCTCTGTGTCAAACCGGC--------------- | ||
| cbriggsae | AAGTCCC--TTCCGATTGCTTGGCACTCGCGAACACCGCGATCACTTCCAATATCGATCCGCGGAGTTAGCCA-GTGTCAACCAAATGGATGTTTGAGACTT | ||
| cjaponica | -AGTCCC--TCCAAACTGCTTGGCACTCGCGAACACCGCGCTTCACAACTAAAAGATGTCGCGGCGTTGGCTTGGTGCCAAACAGGATGAGAGTTTGAGACT | ||
| cbrenneri | AAGGTCCCGTTCTACCTGCTTGGCACTCGCGAACACCGCGATCTAACTGTATAAA---TCGCGGCGTTAGCTC-GTGGCAAACAGGTGATGCTGAAGACTTT | ||
| cremanei | ------------------CTTGGCACTCGCGAACACCGCGATCTTATCAGATAAA---TCGCGGAGTTAGCCG-GTGGCAACCAGG---------------- | ||
| ********************** * * * ***** *** ** *** *** * | |||
| ..... ......>>>>>>>>>>>>>>>>>>>>>.... .......... ............................. ..... | T12E12.9 T12E12.9 21ur-1430 | ||
| celegans | (((((.(((((((..((.(((.((((((... .......... )))))).))).))...))))))).))))) | 1.000 -34.22 | |
| cbriggsae | (((((.. .((((.(((.((((((((.((.(((.((((((((............)))).)))).))).)).) ))))))).))).)))).......))))) | 0.997 -35.60 | |
| cjaponica | ((((.( ((((..(((.((((((((.((.(((.(((((..((..........))...))))).))).))..)))))))).)))..)).))).....)))) | 0.999 -38.90 | |
| cbrenneri | ((((((..((..((((((.(((.(((..((.(((.(((((((.((......)).) )))))).))).)).. ))).))).))))))..))....)))))) | 1.000 -38.30 | |
| cremanei | .(((.((((.((.(((.(((((((.((((...))))) )))))).))).)).) ))).)))..... | 1.000 -24.70 |
| celegans | chromosome:IV:5566409:5566478:1 | Same_strand|Boundary_non-coding|T12E12.9|T12E12.9 ## intergenic ## T12E12.9|ncRNA|21ur-1430| ## {SimpF: WRM0630cD06 1 fosmid,WRM0628dC05 1 fosmid,WRM069aH08 1 fosmid,WRM063bD03 1 fosmid,WRM0625cE08 1 fosmid,WRM0626cB03 1 fosmid} ## {MIR: cel-mir-790} |
| cbriggsae | chromosome:chrIV:8548022:8548120:-1 | Same_strand|Intronic_coding|NM_066961 ## {MIR: cbr-mir-790-1} |
| cjaponica | chromosome:chrUn:34737985:34738083:1 | intergenic |
| cbrenneri | chromosome:chrUn:70276206:70276303:-1 | intergenic |
| cremanei | chromosome:chrUn:60545935:60546044:-1 | intergenic |
miRNAknown_cloningHIGH (1 loci)
cel-mir-246
| absolute | CE1 |
| cel-mir-246 3arm | 30 |
| normalized | CE1 |
| cel-mir-246 3arm | 0.021 |
block5736 (miRBase cel-mir-246) [miRNAknown_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-246 | 0.011 | no | no | 0.44/0.48 | 18/22/0.94 | 0.0 | 0.0 | 19 | 0 | 1 | 0 | 15 | 4 | 3arm | 1 | nd | 0.27 | 3 | 30 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------UACAUGU------------------------------------- | 28 | miR-246 |
| seed | --------------------------------------------------------------------ACAUGUU------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------------TTACATGTTTCGGGTAGGAGCT----------------------- | 22 | 19 | |
| cel-miR-246 | ------------------------------------------------------------------TTACATGTTTCGGGTAGGAGC------------------------ | 21 | 5 |
| ------------------------------------------------------------------TTACATGTTTCGGGTAGGAG------------------------- | 20 | 2 | |
| -------------------------------------------------------------------TACATGTTTCGGGTAGGAGCT----------------------- | 21 | 2 | |
| ------------------------------------------------------------------TTACATGTTTCGGGTAGG--------------------------- | 18 | 2 | |
| celegans | -ATCTGAATTATAAAACAT----CGCCTAACCGTTGTCATGTAATATTTCCCAGAGAAAATGA-TATTACATGTTTCGGGTAGGAGCTGTTCAAACTTTGGAC-------- | ||
| cbriggsae | -----------------AG----CACCTGGCCAATATTATGTAATA--TCAGAAGCAAATTGATTATTACATGTATTGGGTAGGAGCT----------------------- | ||
| cjaponica | TACGCGAATCGGTCAACGATGTACGCCTTTCCG---------------TCAAAGAACCATCCAGTG-TACATGT-CCGCATTCGTCAT----------------------- | ||
| cbrenneri | -----------------AG----CACCTGGCCGAAATCATGTAATA--TAACAATGAGTTC---TATTACATGTTCCGGGTAGGAGCT----------------------- | ||
| cremanei | -GTCCAAACAATAGAACAG----CACCTGGCCGATTTCATGTAATA--TCTGAAAAGAAAAGA-TATTACATGTATCGGGTAGGAGCTGTTTGAGTAAAGGATCTTTCGAA | ||
| * *** ** * * * ******* * * * * | |||
| celegans | .((..((......((((. (.((((.(((....(((((((((((.............)) )))))))))...))).)))).).)))).....))..)). | 1.000 -25.32 | |
| cbriggsae | (( (.((((.((((((.((((((((( ((((.......))))).)))))))))))))).)))).))) | 1.000 -25.60 | |
| cjaponica | ...(((((((((.((....(((((((......( (......))......))) )))))). ))).))))))... | 0.997 -17.70 | |
| cbrenneri | (( (.((((.(((.((.((((((((( .(((.....))). ))))))))))).))).)))).))) | 1.000 -25.30 | |
| cremanei | ((((........(((((( (.((((.(((((..((((((((( (((.........))) ))))))))).))))).)))).))))))).......))))........ | 0.984 -42.56 |
| celegans | chromosome:IV:10940104:10940200:1 | intergenic ## {SimpF: WRM0618aB12 1 fosmid,WRM063cG12 1 fosmid} ## {MIR: cel-mir-246} |
| cbriggsae | chromosome:chrIV:5799902:5800038:-1 | Opposite_strand|Intronic_coding|NM_001111130 ## Same_strand|Intronic_coding|NM_001128722 ## {MIR: cbr-mir-246} |
| cjaponica | chromosome:chrUn:92772728:92772864:1 | Opposite_strand|Exonic_coding|NM_064652 |
| cbrenneri | chromosome:chrUn:102791807:102791943:-1 | intergenic |
| cremanei | chromosome:chrUn:56770618:56770720:1 | Same_strand|Intronic_coding|NM_069625 |
miRNAknown_cloningOK_multiarm_DicerNOK_randfoldOK (1 loci)
cel-mir-124
| absolute | CE1 |
| cel-mir-124 5arm | 1 |
| cel-mir-124 3arm | 5 |
| normalized | CE1 |
| cel-mir-124 5arm | 0.001 |
| cel-mir-124 3arm | 0.003 |
sblock47 (miRBase cel-mir-124) [miRNAknown_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-124 | 0.002 | no | no | 0.50/0.60 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 1 | 0 0 | 17 16 | 7 10 | 5arm 3arm | 1 1 | nd nd | 0.25 0.15 | 3 2 | 6 | 1 | -1 | 1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------AAGGCAC------------------------------------------------ | 5 | miR-124 |
| seed | -------------------------------------------CAUGCAC----------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGCC------------------------------------ | 20 | 5 | |
| ------------------------------------------GCATGCACCCTAGTGACTTT----------------------------------------------------------------------------------- | 20 | 1 | |
| cel-miR-124 | -----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGCCA----------------------------------- | 21 | - |
| celegans | -------------------------GTCCCACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTG----GACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATGATGGG-------------------- | ||
| cbriggsae | --------ATGTCATTGATACATTTTTTCCAGTCGTCATATGGCGTCCACCTGAGTGACTTTAGTG----GACATGTATAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAATTCTGGGATTCAGAAGGTTGGTTTCAT | ||
| ppacificus | ----TGAAGGGTCGTTAAT----------------TCACTTCGCTTTCACC--GGTGACTTTAGTGCTTTGTCACAGAGAG-----AACTAAGGCACGCGGTGAATGCCAAGAG--AATAACGAATCCATCA------------- | ||
| cjaponica | ---------CTTCGTTAGC-CGATTGTCCCTGTTGTCATCTGGCGTCCACCTGAGTGACTTTAGTG----GACAATTTTTGGTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAACCGGGGACTCGATTCTCGTGG------ | ||
| cbrenneri | -----ATTTTGTCATCGATACTAATGCCTCAGTTGTCATCTGGCATACACCTGAGTGACTTTAGTG----GACATCTGAAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAACTTGAGGTCTATTGTCGATAAGGT--- | ||
| cremanei | CTATTCTTATGTCACTGAT---------CCAGATGTCACTTGGCATACACCTGAGTGACTTTAGTG----GACATCTCAAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAATTCTGGAGACTTCTCAAAGGTTGG--- | ||
| *** * ** * **** ************ * ** ************************ * * * | |||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | C29E6.2 C29E6.2 trpa-1 | ||
| celegans | ..(((((..(((((.((((((.((((...(((.(((((((( (((......))))....))))))))))..)))).)))))).)))))...).)))) | 1.000 -40.00 | |
| cbriggsae | (((..((..((.......((((((..((((..((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).))))))..))))....))))))........))..))..))) | 0.987 -47.16 | |
| ppacificus | .((.((((((((.(( ((.(((.((.(((((( ((((.(((((((.(((((...))))).. .)))))))))).))))))).)).))).) )))))))).))).)). | 1.000 -44.10 | |
| cjaponica | ((.((..((. (((..((((((((((((((.((((((.((((...(((.(((((((( (((........)).))).)))))))))..)))).)))))).)))))))).))))))))).))..)).)) | 0.954 -53.70 | |
| cbrenneri | ((((((((..(((((.....((((((((((((((.((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).)))))).))))))))).))))).)))))..)))))))) | 1.000 -57.80 | |
| cremanei | (((..(((.((.......( (((((((((((.((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).)))))).))))))..)))))).......)))))..))) | 0.975 -49.94 |
| celegans | chromosome:IV:11871708:11871803:1 | Same_strand|Intronic_coding|C29E6.2|C29E6.2 ## C29E6.2|protein_coding|trpa-1|trpa-1 encodes a transient receptor potential (TRP) ion channel orthologous to the vertebrate and Drosophila TRPA1 channels. in C. elegans, trpa-1 activity is required for specific mechanosensory behaviors such as nose-touch avoidance and touch-mediated foraging. when expressed in mammalian cells, TRPA-1 exhibits channel activity in response to mechanical stimulation. TRPA-1::GFP reporters are expressed in a number of different cell types including sensory neurons, muscle, and epithelial cells. [Source: WormBase] ## {SimpF: WRM0637dH01 1 fosmid,WRM066aH02 1 fosmid,WRM0623aC08 1 fosmid,WRM063dF01 1 fosmid,WRM0634cA02 1 fosmid,WRM0620aE10 1 fosmid} ## {MIR: cel-mir-124} |
| cbriggsae | chromosome:chrIV:5050216:5050348:-1 | Opposite_strand|Intronic_coding|NM_168571 ## Same_strand|Intronic_coding|NM_001123230 ## {MIR: cbr-mir-124} |
| ppacificus | chromosome:chrUn:138694799:138694901:-1 | intergenic ## {SimpF: trf} |
| cjaponica | chromosome:chrUn:39137220:39137344:1 | Same_strand|Intronic_coding|NM_069848 ## Opposite_strand|Intronic_coding|NM_104618 |
| cbrenneri | chromosome:chrUn:107113354:107113486:-1 | Same_strand|Intronic_coding|NM_069848 |
| cremanei | chromosome:chrUn:80236599:80236727:1 | Same_strand|Intronic_coding|NM_069848 |
miRNAknown_cloningOK_shortStem_loopOverlap_mirtron_randfoldOK (1 loci)
cel-mir-1020
| absolute | CE1 |
| cel-mir-1020 3arm | 11 |
| normalized | CE1 |
| cel-mir-1020 3arm | 0.008 |
block3216 (miRBase cel-mir-1020) [miRNAknown_cloningOK_shortStem_loopOverlap_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1020 | 0.001 | no | no | 0.28/0.33 | 18/22/0.75 | 0.2 | 1.1 | 9 | 0 | 1 | 0 | 0 | -1 | 3arm | 1 | 0 | 0.06 | 1 | 11 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------UUAUUCU------------- | 8 | novel |
| seed | -------------------------------------------------------------AUUAUUC-------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-1020 | -------------------------------------------------------------ATTATTCTGTGACACTTTCAG | 21 | 5 |
| ------------------------------------------------------------AATTATTCTGTGACACTTTC-- | 20 | 2 | |
| -------------------------------------------------------------ATTATTCTGTGACACTTT--- | 18 | 2 | |
| ------------------------------------------------------------AATTATTCTGTGACACTTTCAG | 22 | 1 | |
| -------------------------------------------------------------ATTATTCTGTGACACTTTC-- | 19 | 1 | |
| celegans | GTAAGTGTTACA---GAATAATCTTAGACAAAACAACTAA--AATTAATG-------AAAAATTATTCTGTGACACTTTCAG | ||
| cbrenneri | TTGAAGTTTGTATTGGAATGATCTC-----CATTAACTAATTTTTTAGTGATTTTATAAACATTATTCATTGGAAACTTTAA | ||
| * * ** * **** **** * ****** *** ** *** ******* ** * ** * | |||
| >>>>>++++++++++++ +++++++++++++++++++++++++ ++++++++ +++++++++++++++++++++++++>>>>> | T16G12.1 T16G12.1 T16G12.1 | ||
| celegans | (.(((((((((( (((((((.................. ........ ....))))))))))))))))).).. | 1.000 -19.01 | |
| cbrenneri | .((((((((.((...(((((((... .....(((((....)))))............)))))))..)).)))))))). | 0.792 -14.25 |
| celegans | chromosome:III:10047640:10047709:-1 | Same_strand|Boundary_coding|T16G12.1|T16G12.1 ## T16G12.1|protein_coding|T16G12.1|T16G12.1 [Source:RefSeq_peptide;Acc:NP_499230] ## {SimpF: WRM0639bA05 -1 fosmid,WRM0616bB10 -1 fosmid,WRM0628dH06 -1 fosmid,WRM067aA12 -1 fosmid} ## {MIR: cel-mir-1020} |
| cbrenneri | chromosome:chrUn:100226582:100226691:1 | intergenic |
miRNAknown_lenNOK_cloningHIGH_randfoldOK (1 loci)
cel-mir-228
| absolute | CE1 |
| cel-mir-228 5arm | 156 |
| normalized | CE1 |
| cel-mir-228 5arm | 0.109 |
block5470 (miRBase cel-mir-228) [miRNAknown_lenNOK_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-228 | 0.001 | no | no | 0.42/0.53 | 18/23/0.40 | 0.0 0.0 | 1.2 0.0 | 130 1 | 0 0 | 1 1 | 0 0 | 15 19 | 6 6 | 5arm 5arm | 1 1 | nd nd | 0.17 0.21 | 1 1 | 156 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------AUGGCAC--------------------------------------------------------------------------------------- | 152 | miR-228 |
| seed | -----------------------------UGGCACU-------------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------------------CACUGCA----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------AATGGCACTGCATGAATTC---------------------------------------------------------------------------- | 19 | 90 | |
| cel-miR-228 | ---------------------------AATGGCACTGCATGAATTCACGG------------------------------------------------------------------------ | 23 | 40 |
| ---------------------------AATGGCACTGCATGAATTCACG------------------------------------------------------------------------- | 22 | 17 | |
| ---------------------------AATGGCACTGCATGAATTCAC-------------------------------------------------------------------------- | 21 | 5 | |
| ----------------------------ATGGCACTGCATGAATTC---------------------------------------------------------------------------- | 18 | 3 | |
| -------------------------------GCACTGCATGAATTCACGG------------------------------------------------------------------------ | 19 | 1 | |
| celegans | ------------CCTTATCCCGTTCGCAATGGCACTGCATGAATTCACGGCTATGCATAACGACAGA------------CCGCGGATCATACGGTACCATAGCGGACGGTGATGAGGTTAAT | ||
| cbriggsae | TACATAAAGGAATCCCACCCTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCAAAGCGACAGA------------CCGCGGATCATGCGGTACCATAGCTGACGGTGGTGAGAT---- | ||
| cjaponica | ------------GCGCCTCCGTTCCGCAATGGCACTGCATGAATTCACGGCT-TGCATCCGGCCACACGGACATTTACGCCGCGGATTGTGCGGTACCATAGCGGACGGACGGGCGGCGC-- | ||
| cbrenneri | ---------------------------AATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATA--------------------- | ||
| cremanei | --------AGAATCCTATCTTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATAGCGGACAGTGGTG-------- | ||
| *********************** **** * ** * ******** * ********** | |||
| celegans | (((((((((((((((.((((.((((.((((.(((.(((((...(.....)..)). ))).))))))).)))).)))).)))))))).)))))))..... | 1.000 -44.20 | |
| cbriggsae | ...........(((.(((((((((.((.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).)).))))).)))).))) | 0.998 -42.50 | |
| cjaponica | (((((((((((((((.((((.(((((((.(((((.((((. ....((((......)))).......)))).)))))))))))).)))).)))))...))))).))))) | 1.000 -56.60 | |
| cbrenneri | .((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))). | 0.997 -24.70 | |
| cremanei | .......((((((((((((.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).)))))))).)))) | 0.985 -38.40 |
| celegans | chromosome:IV:5562012:5562109:1 | intergenic ## {SimpF: WRM0630cD06 1 fosmid,WRM0628dC05 1 fosmid,WRM069aH08 1 fosmid,WRM0610cC12 1 fosmid,T12E12.5 1 Expression_profile,WRM063bD03 1 fosmid,WRM0625cE08 1 fosmid,WRM0626cB03 1 fosmid} ## {MIR: cel-mir-228} |
| cbriggsae | chromosome:chrIV:8555778:8555881:-1 | Same_strand|Intronic_coding|NM_066961 ## {MIR: cbr-mir-228} |
| cjaponica | chromosome:chrUn:34732342:34732448:1 | intergenic |
| cbrenneri | chromosome:chrUn:70281145:70281282:-1 | intergenic |
| cremanei | chromosome:chrUn:60549600:60549691:-1 | intergenic |
miRNAknown_multiarm_DicerOK_shortStem_randfoldOK (1 loci)
cel-mir-1829c
| absolute | CE1 |
| cel-mir-1829c 5arm | 2 |
| cel-mir-1829c 3arm | 0.333 |
| normalized | CE1 |
| cel-mir-1829c 5arm | 0.001 |
| cel-mir-1829c 3arm | 0.000 |
sblock67 (miRBase cel-mir-1829c) [miRNAknown_multiarm_DicerOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1829c | 0.001 | no | no | 0.35/0.36 | 22/23/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 2 | 4 6 | 5arm 3arm | 1 3 | nd nd | 0.14 0.27 | 1 4 | 3 | 1 | 2 | 2 |
| Member of family novel1 (seed AACCACU): cel-mir-1829c, cel-mir-1829b |
| reads | miRBase family seed | ||
| seed | ----------AGCGAAA---------------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------------------------------------------------A--------ACC-ACU-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------AAGCGAAATTCAA----GATG----GTTGT------------------------------------------------------------ | 22 | 2 | |
| --------------------------------------------------------CA--------ACC-ACTGGAATT-----TCTCTATT------- | 22 | 1 | |
| cel-miR-1829c | ---------AAGCGAAATTCAA----GATG----GTTGTA----------------------------------------------------------- | 23 | - |
| celegans | ---------AAGCGAAATTCAA----GATG----GTTGTAAAACATC-GAGTACTACA--------ACC-ACTGGAATT-----TCTCTATTGC----- | ||
| cbriggsae | ---------AAGCGAAATG-------GATAAT--GATGAAAAAC----GGGCAACGAA--------TTC-ATTTCCCTT-----TCTCTC--------- | ||
| cjaponica | TGTGTTCACAAGCGAAATTCAGGTACGACGCTCCGATGCGGAACATTGGAGCGGCGTA--------CCCGATTTGAATT-----TCGCTTGTGAATCCA | ||
| ppacificus | ---------AAGCGAAA-----------------GATCATGGACAATTGAGAGATTCAGATCGTCTCACGAATTGCATGAAAAATCGATC--------- | ||
| ******** * * ** * * * * * * * ** * | |||
| +++++ +++++++++++++ ++++ +++++++++++++ ++++++++++ +++ +++++++++ ++++++++++ +++++ | F39B1.1 F39B1.1 F39B1.1 | ||
| celegans | .((.(((((((.( (.(( ((((((..((... ..))..)))) ))) ))).))))) )).))..... | 1.000 -20.20 | |
| cbriggsae | .((.((((.( ((.... ((((((...( (.....)).. ))) )))))).)) )).)). | 1.000 -10.20 | |
| cjaponica | ((..(((((((((((((((((((((((.((((((((((.....)))))))))).)))) )).....)))))) )))))))))))..)) | 1.000 -52.80 | |
| ppacificus | ...(((.. ..(((((..((((((((((((....))).)))))...)))))))))....)))... | 0.989 -12.90 |
| celegans | chromosome:X:15236283:15236344:-1 | Same_strand|Intronic_coding|F39B1.1|F39B1.1 ## F39B1.1|protein_coding|F39B1.1|F39B1.1 [Source:RefSeq_peptide;Acc:NP_510529] ## {SimpF: WRM0639bH04 -1 fosmid,WRM0635aF06 -1 fosmid,WRM0621bC05 -1 fosmid,WRM068aA02 -1 fosmid,WRM0611bA02 -1 fosmid,WRM0629dB10 -1 fosmid} ## {MIR: cel-mir-1829c} |
| cbriggsae | chromosome:chrIV:2565815:2565916:1 | Opposite_strand|Intronic_coding|NM_020714 ## {Repeats: CT-rich 1 64 1 class=Low_complexity} |
| cjaponica | chromosome:chrUn:59159085:59159170:1 | intergenic |
| ppacificus | chromosome:chrUn:164524218:164524319:1 | intergenic |
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