confident miRBase miRNAs
miRNAknown_cloningHIGH_randfoldOK (17 loci)
cbr-mir-228
| absolute | AF16 |
| cbr-mir-228 5arm | 77 |
| normalized | AF16 |
| cbr-mir-228 5arm | 0.201 |
block2189 (miRBase cbr-mir-228) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-228 | 0.001 | no | no | 0.39/0.48 | 18/23/0.95 | 0.0 | 0.0 | 55 | 0 | 1 | 0 | 16 | 3 | 5arm | 1 | nd | 0.17 | 1 | 77 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------AUGGCAC---------------------------------------------------------------------------------------------------- | 77 | miR-228 |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-228 | --------------------------------------AATGGCACTGCATGAATTCACGG------------------------------------------------------------------------------------- | 23 | 55 |
| --------------------------------------AATGGCACTGCATGAATTCACG-------------------------------------------------------------------------------------- | 22 | 11 | |
| --------------------------------------AATGGCACTGCATGAATTCA---------------------------------------------------------------------------------------- | 20 | 7 | |
| --------------------------------------AATGGCACTGCATGAATT------------------------------------------------------------------------------------------ | 18 | 4 | |
| cbriggsae | ----------------------ATCCCACCCTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCAAAGCGACAGA------------CCGCGGATCATGCGGTACCATAGCTGACGGTGGTGAGAT----------------- | ||
| cremanei | --CTGGCGAGACTCTGGAAAGAATCCTATCTTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATAGCGGACAGTGGTGAGATATTGAGAATATTGGTAG | ||
| celegans | CTTTGGCGAGACATTTTCC---TCCTTATCCCGTTCGCAATGGCACTGCATGAATTCACGGCTATGCATAACGACAGA------------CCGCGGATCATACGGTACCATAGCGGACGGTGATGAGGTTAATGAAGTAGTGAGAG | ||
| cbrenneri | --------------------------------------AATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATA---------------------------------- | ||
| cjaponica | -----------------------GCGCCTCCGTTCCGCAATGGCACTGCATGAATTCACGGC-TTGCATCCGGCCACACGGACATTTACGCCGCGGATTGTGCGGTACCATAGCGGACGGACGGGCGGCGC--------------- | ||
| ppacificus | --------------------------------------GATGGCACCGCGCG---TCATGT--TTGCAT---GTTAGA-----------------GATCACACAGCGAAA-AGCATGAAGTGGTGCCACC---------------- | ||
| ******* ** * *** * **** * * * *** * * * * | |||
| +++++ +++++++++++++++++++++++++++++++++++++++ +++++++++++++++ +++++++++++++++++++++++++++++++++++++++ +++++ | NM_066961 | ||
| cbriggsae | (((.(((((((((.((.((((.(((((((((.(((.((( .((........)).. ))).)))))))))))).)))).)).))))).)))).))) | 1.000 -42.20 | |
| cremanei | (((.(((...(((.((....(((.((((((((((((.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).)))))))).)))).))).)).)))...))).))) | 0.848 -47.20 | |
| celegans | ((((.((...((.((.... .(((((((((((((((.((((.((((.(((.((((.(((...((........)).. ))).))))))).)))).)))).)))))))).))))))).....)).)).)).)))) | 0.997 -49.90 | |
| cbrenneri | .((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))). | 0.997 -24.70 | |
| cjaponica | (((((((((((((((.((((.(((((((.(((((.(((( .....((((......)))).......)))).)))))))))))).)))).)))))...))))).))))) | 1.000 -56.60 | |
| ppacificus | ..(((((((((... (((((( ((((.( ((.... ......))))))).. .)))))).))))))))).. | 1.000 -27.70 |
| cbriggsae | chromosome:chrIV:8555778:8555870:-1 | Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no} ## {MIR: cbr-mir-228} |
| cremanei | chromosome:chrUn:60549579:60549708:-1 | intergenic |
| celegans | chromosome:chrIV:5561992:5562122:1 | intergenic ## {MIR: cel-mir-228} |
| cbrenneri | chromosome:chrUn:70281151:70281283:-1 | intergenic |
| cjaponica | chromosome:chrUn:34732342:34732448:1 | intergenic |
| ppacificus | chromosome:chrUn:153526011:153526143:1 | Opposite_strand|Intronic_coding|NM_133373 ## Same_strand|Intronic_coding|NM_013355 |
cbr-mir-74
| absolute | AF16 |
| cbr-mir-74 3arm | 338 |
| normalized | AF16 |
| cbr-mir-74 3arm | 0.881 |
block4394 (miRBase cbr-mir-74) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-74 | 0.001 | no | no | 0.43/0.50 | 18/23/0.89 | 0.0 | 0.0 | 299 | 0 | 1 | 0 | 7 | 6 | 3arm | 1 | nd | 0.14 | 1 | 338 | 1 | na | na |
| Located in cluster 9: cbr-mir-74, sblock69_novel, cbr-mir-73 |
| Member of family miR-73/74 (seed GGCAAGA): cel-mir-73, cbr-mir-74, cbr-mir-73, sblock19_novel, sblock69_novel |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------GGCAAGA----------------------------------------- | 338 | miR-73/74 |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAG---------------------------- | 21 | 299 | |
| -------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCT------------------------------ | 19 | 34 | |
| -------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTA----------------------------- | 20 | 2 | |
| -------------------------------------------------------------------------------TGGCAAGAAATGGCAGTC------------------------------- | 18 | 2 | |
| -------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAGAT-------------------------- | 23 | 1 | |
| cbr-miR-74 | -------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAGA--------------------------- | 22 | - |
| cbriggsae | -------------------------CGCACTTTTGGGCTTCCATATCTTTCCCAGCTCCTC-TCATTTACTATGGATGCTGGCAAGAAATGGCAGTCTAGATGTGCA--------------------- | ||
| cremanei | -TGACCGAAGACGCTGGAAAAGGTCGACACGTTTGGACTTCCGTCTCTTTCCCAGCTGATA-----TTGGATAGCATGCTGGCAAGAAATGGCAGTCCAGATGTGTACACCTTCAAGCTCTTGTCA-- | ||
| celegans | CAAAGCAAAATGGTTCAAAAA-------ACGTTCGGGCTTCCATCTCTTTCCCAGCCTACA-----TCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTT-----TTCAACCAAATGCTATG | ||
| cbrenneri | ------------------GCCCCGTCACACAAATGGGCTTCCTTTTCGTTCCCAGCTGAA------TTTCTAATCATGCTGGCAAGACAAGGCAGTCTACTTGTGTGACGGGGC-------------- | ||
| cjaponica | -GAAGCGGTGAAGTGAATGGCGACACGCGCGATTGGGCTTCCATATCTTTCCCAGCTGAAACATCTTTTAAC-----GCTGGCAAGAAATGGCAGTCTACTCGCGCATGCCTGCTCCCGCTCTC---- | ||
| ppacificus | --------------------------------ATGAAGAGCATTTCCTTTCTCAGGTCATTGATCTTCTAGCCTTGGCTTGGCAAGAAATG---GTCTCTTCAT------------------------ | ||
| * * * * *** *** * ******** * * *** | |||
| ----- ------------------------------------ --------------------------------------------- ----- | NM_001087279 | ||
| ----- ------------------------------------ --------------------------------------------- ----- | NM_072843 | ||
| +++++ ++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001109816 | ||
| ----- ------------------------------------ --------------------------------------------- ----- | NM_065440 | ||
| +++++ ++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_020367 | ||
| cbriggsae | .((((.((((((((.((((.((((..((((((((.. ...........))).))))).)))).)))).)))))))).)))). | 1.000 -36.22 | |
| cremanei | .(((..((((.(((....(((((..(((((((((((((.((((.((((..(((((((.(( (...))).)).))))).)))).)))).)))))))))))))..)))))..)))))))))). | 1.000 -50.40 | |
| celegans | ...((((...(((((..(((( ((((..(((((.((((.((((..((((((((.. ........)))))))).)))).)))).)))))..)))))) )).)))))..))))... | 1.000 -42.40 | |
| cbrenneri | ((((((((((((((.((((((.((((.((....((((((((. .......))).)))))...)).)))).)))))).)))))))))))))) | 1.000 -52.10 | |
| cjaponica | ..(((((.((.((....((((....((((((.((((((.((((.((((..((((((((((....))))).. ))))).)))).)))).)))))).)))))).)))).)))))))))... | 0.981 -48.80 | |
| ppacificus | ((((((((((((((.....((((((((...............))))))))...)))))) ..)))))))) | 0.640 -19.76 |
| cbriggsae | chromosome:chrX:4493578:4493658:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001109816|MHC ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} ## {MIR: cbr-mir-74} |
| cremanei | chromosome:chrUn:103837392:103837511:-1 | intergenic |
| celegans | chromosome:chrX:2369030:2369140:1 | intergenic ## {MIR: cel-mir-74} |
| cbrenneri | chromosome:chrUn:1030552:1030641:-1 | intergenic |
| cjaponica | chromosome:chrUn:6831845:6831962:1 | intergenic |
| ppacificus | chromosome:chrUn:17469670:17469790:-1 | intergenic |
cbr-mir-55
| absolute | AF16 |
| cbr-mir-55 3arm | 795 |
| normalized | AF16 |
| cbr-mir-55 3arm | 2.072 |
block4661 (miRBase cbr-mir-55) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-55 | 0.001 | no | no | 0.39/0.46 | 18/24/0.98 | 0.0 | 0.0 | 734 | 0 | 1 | 0 | 22 | 6 | 3arm | 1 | nd | 0.13 | 2 | 795 | 1 | na | na |
| Located in cluster 10: cel-mir-56, cbr-mir-55, block4662_novel, cel-mir-54, block4665_novel, block4666_novel |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-56, cel-mir-54, cbr-mir-55, cbr-mir-52, cbr-mir-51, block4665_novel, block4666_novel |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------ACCCGUA----------------------------------------------------- | 774 | miR-51/52/55 |
| seed | --------------------------------------------------------------------------------------GUAUAUU------------------------------------------------- | 15 | novel |
| seed | ---------------------------------------------------------------------------------UACCCGU------------------------------------------------------ | 5 | novel |
| seed | -----------------------------------------------------------------------------------CCCGUAU---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-55 | ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCGAG-------------------------------------- | 23 | 734 |
| ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCG---------------------------------------- | 21 | 28 | |
| -------------------------------------------------------------------------------------CGTATATTTTTCTGCCGAG-------------------------------------- | 19 | 14 | |
| ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCGA--------------------------------------- | 22 | 11 | |
| --------------------------------------------------------------------------------ATACCCGTATATTTTTCTGCCGAG-------------------------------------- | 24 | 4 | |
| --------------------------------------------------------------------------------ATACCCGTATATTTTTCTGCCGA--------------------------------------- | 23 | 1 | |
| -------------------------------------------------------------------------------------CGTATATTTTTCTGCCGA--------------------------------------- | 18 | 1 | |
| ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCGAGC------------------------------------- | 24 | 1 | |
| ----------------------------------------------------------------------------------ACCCGTATATTTTTCTGCCGA--------------------------------------- | 21 | 1 | |
| cbriggsae | ----------AAAATT----GAATCGTCACAAAGGGGGACTCGGCGGAAAATATGGTGGTATACTACACAGTGAATAGATATACCCGTATATTTTTCTGCCGAGCCCCTCCACGACATCAATAAGG---------------- | ||
| celegans | --------------TGTCTAGATTTGGAACTTAATGGGACTCGGCAGAAACCTATCGGTTATACTTTTT--GGATATGCTATACCCGTATAAGTTTCTGCTGAGCCCCT----TATTCC----------------------- | ||
| cbrenneri | TAGTATTCCAAGAATTGCCAGGTTTGGTAGTCGCTGGGACTAGGCGGAAGTATAGAGGGTATACTTCAT--CAAGTAACTATACCCGTATATATTTCTGCTTAGCCCCT----GACACCATCTTGGCCTTTCTTGCTATCTA | ||
| * * * * * ****** *** *** * ****** * ************ ******* ******* * * | |||
| ----- ------ ---------------------------------------------------------------------------------------------------------- ----- | NM_026450 | ||
| ----- ------ ---------------------------------------------------------------------------------------------------------- ----- | NM_001011629 | ||
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_064155 | ||
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001101467 | ||
| ----- ------ ---------------------------------------------------------------------------------------------------------- ----- | NM_205032 | ||
| cbriggsae | ...((( ((.((((......(((((.((((((((((((((((..(((((((((.........))).))))))..)))).)))))))))))))))))..))))..))))).... | 1.000 -41.90 | |
| celegans | ...........((((..(((.(((.((((((((((((.((((((.((((...... ........)))).))).))).))))))))))))))).) )))))) | 0.930 -33.64 | |
| cbrenneri | (((.((..((((((..((((((..((((.((((..(((.(((((((((((((((..((((((((((... .)))))....)))))...)))))))))))))))))).) ))))))).))))))..))))))..))))) | 1.000 -61.30 |
| cbriggsae | chromosome:chrX:16836967:16837078:-1 | Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## {Repeats: no} ## {MIR: cbr-mir-55} |
| celegans | chromosome:chrX:13144752:13144850:-1 | intergenic ## {MIR: cel-mir-55} |
| cbrenneri | chromosome:chrUn:8943944:8944079:1 | intergenic |
cbr-let-7
| absolute | AF16 |
| cbr-let-7 5arm | 67 |
| normalized | AF16 |
| cbr-let-7 5arm | 0.175 |
block5206 (miRBase cbr-let-7) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-let-7 | 0.001 | no | no | 0.35/0.39 | 18/23/0.99 | 0.0 | 0.0 | 59 | 0 | 1 | 0 | 12 | 4 | 5arm | 1 | nd | 0.09 | 1 | 67 | 1 | na | na |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cbr-let-7, cbr-mir-48, cbr-mir-241, cbr-mir-84 |
| reads | miRBase family seed | ||
| seed | --------------------------------GAGGUAG--------------------------------------------------------------------------------------------------- | 67 | miR-241/48/let-7/84 |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-let-7 | -------------------------------TGAGGTAGTAGGTTGTATAGTT------------------------------------------------------------------------------------- | 22 | 59 |
| -------------------------------TGAGGTAGTAGGTTGTATAGTTT------------------------------------------------------------------------------------ | 23 | 5 | |
| -------------------------------TGAGGTAGTAGGTTGTATAGT-------------------------------------------------------------------------------------- | 21 | 2 | |
| -------------------------------TGAGGTAGTAGGTTGTAT----------------------------------------------------------------------------------------- | 18 | 1 | |
| cbriggsae | -------------------ACTGGGGTACGGTGAGGTAGTAGGTTGTATAGTTTAGAATATTACT----------CTCGGTG-AACTATGCAAGTT-TCTACCTCACCGAATACCAGG-------------------- | ||
| cremanei | AGATGGCGGCCGGTCAACACTGTGCGTCTGGTGAGGTAGTAGGTTGTATAGTTTAGAATCTTACC-----------TTGGTG-AACTATGCAAGTT-TCTACCTCACCAGATACAGAATCTTCTCAGCTGCATCGTCT | ||
| celegans | -------------------------------TGAGGTAGTAGGTTGTATAGTTTGGAATATTACC----------ACCGGTG-AACTATGCAATTT-TCTACCTTA-------------------------------- | ||
| cbrenneri | -------------------------------TGAGGTAGTAGGTTGTATAGTTTAGAATCATATC-----------CCGGTG-AACTATGCAAGCT-TCTACCTCA-------------------------------- | ||
| ppacificus | -------------------------------TGAGGTAGTAGGTTGTATAGTTCGGAATAATACCAACTGTATCAATTGGTGAAACTGTACAACCTGTCTAGCTTG-------------------------------- | ||
| cjaponica | -------------------------------AGAGGTAG-ACATTGTTTATTTGAAAGTTCTCCC------------TGATG-AGCTACA-------TCTACTTTA-------------------------------- | ||
| ******* * **** ** ** * * * * ** * ** **** * | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++ +++++++++++++ +++++++++++++++++++++ +++++ | NM_078046 | ||
| ----- ---------------------------------------------- ------- ------------- --------------------- ----- | NM_078045 | ||
| ----- ---------------------------------------------- ------- ------------- --------------------- ----- | NM_001087668 | ||
| cbriggsae | .((((..(.(((((((((((.((.((((((((((((((.......) ))....) )))))))))).)) .))))))))))).)..)))). | 1.000 -41.90 | |
| cremanei | ((((((((((.((......((((..((((((((((((((.((.(((((((((((...(((..... ..)))) )))))))))).)) .)))))))))))))))))).......)).)))))..))))) | 0.965 -53.12 | |
| celegans | ((((((((.((((((((((((........((((( ...)))) ))))))))))))) .)))))))) | 1.000 -23.80 | |
| cbrenneri | .(((((((.((.((((((((((((.......... ....)) )))))))))).)) .))))))). | 1.000 -26.84 | |
| ppacificus | .(((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).))). | 0.918 -27.00 | |
| cjaponica | .((((((( (....(((((((.((......)).. .)))) ))).... )))))))). | 0.968 -12.80 |
| cbriggsae | chromosome:chrX:18407632:18407718:1 | Same_strand|Intronic_non-coding|NM_078046|C05G5.1 ## Opposite_strand|Intronic_non-coding|NM_078045|F33C8.4 ## {Repeats: no} ## {MIR: cbr-let-7} |
| cremanei | chromosome:chrUn:79515416:79515540:-1 | Opposite_strand|Intronic_coding|NM_003428 |
| celegans | chromosome:chrX:14744082:14744208:-1 | intergenic ## {MIR: cel-let-7} |
| cbrenneri | chromosome:chrUn:8202026:8202152:1 | Same_strand|Intronic_coding|NM_001003448 |
| ppacificus | chromosome:chrUn:94902677:94902803:1 | intergenic |
| cjaponica | chromosome:chrUn:47230815:47230941:1 | intergenic |
cbr-mir-47
| absolute | AF16 |
| cbr-mir-47 3arm | 90 |
| normalized | AF16 |
| cbr-mir-47 3arm | 0.235 |
block5238 (miRBase cbr-mir-47) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-47 | 0.001 | no | no | 0.55/0.57 | 20/22/1.00 | 0.0 | 0.0 | 73 | 0 | 1 | 0 | 16 | 11 | 3arm | 1 | nd | 0.10 | 1 | 90 | 1 | na | na |
| Member of family miR-46/47 (seed GUCAUGG): cbr-mir-47, cbr-mir-46 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------GUCAUGG------------------------------------------------------ | 90 | miR-46/47 |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTTC----------------------------------------- | 21 | 73 | |
| --------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTT------------------------------------------ | 20 | 17 | |
| cbr-miR-47 | --------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA---------------------------------------- | 22 | - |
| cbriggsae | ------------------TAGCTGAGGAAGACTGAAGGGAGCTTTCTTTTGACAGTTCG---ATTTCGAAC---TCTTACTGTCATGGAGGCGCTCTCTTCAGGT-----GAACTCTGGCTC-------------------- | ||
| cremanei | TAAGGTAAGTTTCGAAAAAAGCCGAGTGAGACTGAAGAGAGCATTCTGTTGACAGTTCG---ATTCCGAAC---TCCTACTGTCATGGAGGCGCTCTCTTCAGGT-----GATCTCTGGCTAGTTTTTCTTTGTTTTTCTTG | ||
| celegans | CAAGGTTAGTTGATCGAG-AGCCGACTGAAACTGAAGAGAGCAGTCTATTGACAGT-CGGTTACTCGAAAT---CTTTACTGTCATGGAGGCGCTCTCTTCAGAT-----GATGTCTGGCCCATTTTT--TAATCAATTTTG | ||
| cbrenneri | --------------------GCCGAGAGAAGCTGAAGGGAGCTTTCTGGTGACAGTTCG---ATTTTGAAC---TCTTACTGTCATGGAGGCGCTCTCTTCAGAT-----GATCTTTGGCTGCTTTTT-------------- | ||
| cjaponica | --CGGTAAGTTGGCCAAAAGACCGGGTGAAGCTGAAGAGAGCCGTCCTTTGACAGTTCGTCCACGTGGAAT--ATCGTGCTGTCATGGAGTCGCTCTCTTCAGAT-----GACCAC-GGTCTTTCTTGGTTTTTTCTTTTTG | ||
| ppacificus | ----ACCAGGACCCCCGGCACCACGCAGAGACCGAAGAGAGCCTTCTGTTGACAGTGCGGGCCGTTGGTGCTAATGCTATTGTCATGGAGTCGCTCTCTTCAGGCTTGTGGTCCTCAGGGTACGGT---------------- | ||
| * * * **** **** ** ******* ** * ********** ************ * ** | |||
| ----- ----------------------------------------- --------- ------------------------------- ------------ ----- | NM_072416 | ||
| cbriggsae | .(((((((.....((((((((((((((((..(((((((((( ....))).. ....))))))).))))).))))))))))).. ...))).)))). | 1.000 -40.50 | |
| cremanei | (((((........(((((((((((((.....(((((((((((.(((((.(((((((..( (........ ))..))))))))))))..))))))))))).. ...))).))))..))))))........))))) | 0.999 -47.19 | |
| celegans | (((((((.(((((..((. .((((((.....(((((((((((.((((..((((((( .((((......))) )...)))))))...))))))))))))))).. ...))).)))...))..) )))).))))))) | 1.000 -48.50 | |
| cbrenneri | (((((((....((((((((((((((((.((((((((..( (........ ))..))))))))))))).))))))))))).. ..)))).)))........ | 1.000 -41.80 | |
| cjaponica | (((.(((..((((((((((((((((....(((((((((((..(((..(((((((.(((((....))).. ..)).))))))).)))...))))))))))).. .))).) )))))))..)))))....))).))) | 0.998 -57.60 | |
| ppacificus | (((...((((..((.(((((...(((.(((((((((((((((...(((((((((.(((.......)))...)).))))))).))))..))))))))).))))))))))))...))))..))) | 0.996 -51.00 |
| cbriggsae | chromosome:chrX:19620645:19620737:1 | Opposite_strand|Intronic_coding|NM_072416|str-204 ## {Repeats: no} ## {MIR: cbr-mir-47} |
| cremanei | chromosome:chrUn:96562078:96562208:1 | intergenic |
| celegans | chromosome:chrX:13921158:13921287:1 | intergenic ## {MIR: cel-mir-47} |
| cbrenneri | chromosome:chrUn:53134808:53134904:1 | Same_strand|Intronic_coding|NM_001047803 |
| cjaponica | chromosome:chrUn:55670811:55670942:1 | Same_strand|Intronic_coding|NM_137355 |
| ppacificus | chromosome:chrUn:163065262:163065383:1 | intergenic |
cbr-mir-240
| absolute | AF16 |
| cbr-mir-240 3arm | 25 |
| normalized | AF16 |
| cbr-mir-240 3arm | 0.065 |
sblock81 (miRBase cbr-mir-240) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-240 | 0.001 | no | no | 0.43/0.48 | 21/23/1.00 | 0.0 0.4 | 0.0 0.0 | 1 25 | 0 0 | 1 1 | 0 0 | 31 20 | -45 7 | loop 3arm | 1 1 | nd nd | 0.14 0.17 | 1 1 | 26 | 1 | na | na |
| Located in cluster 11: cbr-mir-240, cbr-mir-786 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------ACUGGCC---------------------------------- | 14 | miR-240 |
| seed | ---------------------------------------------------------------------------UACUGGC----------------------------------- | 11 | novel |
| seed | --------------------------------GAGAAUU------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-240 | ---------------------------------------------------------------------------TACTGGCCTCCAAATTTTCGCT-------------------- | 22 | 14 |
| --------------------------------------------------------------------------ATACTGGCCTCCAAATTTTCGCT-------------------- | 23 | 11 | |
| -------------------------------CGAGAATTTCGAGGCCTGAAT----------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | CGCTGTCTTTATTTTGAAACTGTTTTCAAATCGAGAATTTCGAGGCCTGAATGCAA--GAACCGTTTTGAG--CATACTGGCCTCCAAATTTTCGCTTTGAATTTTAGTTACGCGTG | ||
| celegans | -----------------------------ATCGAGGATTTTGAGACTAGAATGCTT--GAATTGTACTAG---CATACTGGCCCCCAAATCTTCGCT-------------------- | ||
| cbrenneri | -----------------------------AGCTGAGATATGCTGCTCTGAACGCAACGGAGTTACCCGAAAGCTCTACTGGCGGCTCTATCTAGTCT-------------------- | ||
| * * ** * * *** ** ** ******* * ** * ** | |||
| ------------------------------------------------------------- ------------- ------------------------------------------------- | NM_003107 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++ | NM_177736 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++ | NM_133381 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110160 | ||
| cbriggsae | (((..((........))(((((..((((((.(((((((((.((((((.(.((((.. (((....)))..) ))).).)))))).))))))))).))))))...)))))..))).. | 1.000 -36.80 | |
| celegans | ..(((((((((.....((((.(((((. ..........)) ))).)))).....))))))))).. | 1.000 -17.10 | |
| cbrenneri | .(((.(((((.((((((......((..(((......)))...))......))))))..)))))))).. | 0.909 -18.30 |
| cbriggsae | chromosome:chrX:13573430:13573542:1 | Opposite_strand|Intronic_non-coding|NM_003107|SOX4 ## Same_strand|Intronic_non-coding|NM_177736|Lrrc61 ## {Repeats: no} ## {MIR: cbr-mir-240} |
| celegans | chromosome:chrX:7882536:7882688:1 | intergenic ## {MIR: cel-mir-240} |
| cbrenneri | chromosome:chrUn:5547325:5547477:-1 | Opposite_strand|Intronic_coding|NM_071398 ## Same_strand|Intronic_coding|NM_074807 |
miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK (7 loci)
cbr-mir-244
| absolute | AF16 |
| cbr-mir-244 5arm | 11 |
| cbr-mir-244 3arm | 4 |
| normalized | AF16 |
| cbr-mir-244 5arm | 0.029 |
| cbr-mir-244 3arm | 0.010 |
sblock10 (miRBase cbr-mir-244) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-244 | 0.001 | no | no | 0.35/0.45 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 10 4 | 0 0 | 1 1 | 0 0 | 16 17 | 2 5 | 5arm 3arm | 1 1 | nd nd | 0.08 0.00 | 2 0 | 15 | 1 | 2 | 0 |
| reads | miRBase family seed | ||
| seed | ------------------------------------CUUUGGU----------------------------------------------------------------------------------------- | 11 | miR-244 |
| seed | -----------------------------------------------------------------------------------ACCGCUU------------------------------------------ | 4 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-244 | -----------------------------------TCTTTGGTTGTACAAAGTGGTATG------------------------------------------------------------------------- | 24 | 10 |
| ----------------------------------------------------------------------------------TACCGCTTTACAGCTA---AAGG--------------------------- | 20 | 4 | |
| -----------------------------------TCTTTGGTTGTACAAAGTGGTAT-------------------------------------------------------------------------- | 23 | 1 | |
| cbriggsae | --------------CCCAAATTTCTCGATT-----TCTTTGGTTGTACAAAGTGGTATG-GCTCTCT---------TGCTCATACCGCTTTACAGCTA---AAGGAATCGATTGATTTTGGA---------- | ||
| cremanei | ---TATTATTCCTTCTCCAGTTTCTCGATC-----TCTTTGGTTGTACAAAGTGGTATG-GCACTTCTCAATAGTCTGCTCATACCGCTTTTCGGCTA---AAGGAATCGA--GTCTTTGGTGTCATTAATA | ||
| celegans | --------------CCTCCATATCTCAATC-----TCTTTGGTTGTACAAAGTGGTATG-GCTCATC----GAATAAGCACATACTGCTTTTCAGCTA---AAGGAATTGA--GATTTTGTAGG-------- | ||
| cbrenneri | ATTCTGATTTTTCCGCCCCATTTCTCGATC-----TCTTTGGTTGTACAAAGTGGTATG-GCAATTTCATTAAAAATGCTCATACCGCTTTTCAGCTG---AAGGAATCGT--GTTTGTGGGTAATTAGAAT | ||
| cjaponica | ----------------GCCGATTCTCGATC-----TCTTTGGTTGTACAAAGTGGTATGAGTACTATAAGAGGCAATG--CATACCGCTTTTCAACTG---AAGGAATCGA--GTGTTTGGC---------- | ||
| ppacificus | -----------------TCTTTGGTTGACCTTTGATCTTTGGT---------TGATCTTTGATCTTTGAAGGATCAAG-------------GCAGCTAACGAAGAAAACAA--GAGTAAGAAGGAGA----- | ||
| * * ******** ** * * * * * ** *** ** * * * | |||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_080376 | ||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_166030 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_131292 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_058465 | ||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_025451 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_005379 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_005235 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_001042599 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_170794 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_001123230 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_001004111 | ||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_003025 | ||
| cbriggsae | ((.(((((..(((((( ((((((((((((..(((((((((( ((..... .)).)))))))))))))))))) ))))))))))..))))).)). | 1.000 -46.20 | |
| cremanei | (((((........((((...((((((. .(((((((((...((((((((((( (((...((....))..))).))))))))))).)))))) )))..))))) )...))))......))))) | 0.998 -42.84 | |
| celegans | (((.((.((((((((. .(((((((((...((((..((((( (((.... .....))).)))))..)))).)))))) )))..))))) )))..)).))) | 1.000 -40.20 | |
| cbrenneri | (((((((((.....((((((.....((((. .(((..((((...((((((((((( (((.(((.....))).))).))))))))))).)))).. )))..)))). ...)).))))))))))))) | 1.000 -47.30 | |
| cjaponica | (((((..((((((. .(((..((((...(((((((((((....((.....))...... ))))))))))).)))).. )))..))))) )...))))) | 1.000 -41.90 | |
| ppacificus | ((.(((((((.((.(((((((((... .((((...))))....)))))))))) )))))))).))......... .............. | 0.908 -22.40 |
| cbriggsae | chromosome:chrI:2688433:2688522:1 | Opposite_strand|Intronic_coding|NM_080376|mam ## Same_strand|Intronic_coding|NM_131292|col2a1a ## Same_strand|Intronic_non-coding|NM_058465|src-1 ## Opposite_strand|Intronic_non-coding|NM_025451|Camk2n1 ## {Repeats: no} ## {MIR: cbr-mir-244} |
| cremanei | chromosome:chrUn:17603862:17603979:-1 | Same_strand|Intronic_coding|NM_000280 |
| celegans | chromosome:chrI:4684322:4684416:-1 | intergenic ## {MIR: cel-mir-244} |
| cbrenneri | chromosome:chrUn:31651738:31651858:1 | Same_strand|Intronic_coding|NM_203889 |
| cjaponica | chromosome:chrUn:44620221:44620314:-1 | Same_strand|Intronic_coding|NM_143141 |
| ppacificus | chromosome:chrUn:104830954:104831039:1 | Same_strand|Intronic_coding|NM_016621 ## {Repeats: GA-rich 1 49 1 class=Low_complexity} ## {SimpF: trf} |
cbr-mir-85
| absolute | AF16 |
| cbr-mir-85 5arm | 3 |
| cbr-mir-85 3arm | 14 |
| normalized | AF16 |
| cbr-mir-85 5arm | 0.008 |
| cbr-mir-85 3arm | 0.036 |
sblock11 (miRBase cbr-mir-85) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-85 | 0.001 | no | no | 0.33/0.42 | 23/25/0.67 | 0.0 0.5 | 0.0 0.3 | 3 13 | 0 0 | 1 1 | 0 0 | 9 7 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.08 0.16 | 1 1 | 17 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------ACAAAGU-------------------------------------- | 7 | miR-85 |
| seed | -----------------------------------------------------------------------UACAAAG--------------------------------------- | 7 | novel |
| seed | -----------------------CGCUUUU--------------------------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------TTACAAAGTA-----TTTGAAAAGGCGTGC----------------- | 25 | 6 | |
| -----------------------------------------------------------------------TACAAAGTA-----TTTGAAAAGGCGTG------------------ | 23 | 4 | |
| ----------------------CCGCTTTTTCAG-TAG-----TTTGAAACC----------------------------------------------------------------- | 24 | 3 | |
| cbr-miR-85 | -----------------------------------------------------------------------TACAAAGTA-----TTTGAAAAGGCGTGC----------------- | 24 | 3 |
| ----------------------------------------------------------------------TTACAAAGTA-----TTTGAAAAGGCGTG------------------ | 24 | 1 | |
| cbriggsae | -------------CCCCGGTGCCCGCTTTTTCAG-TAG-----TTTGAAACCAGAGAT-GAT--AGTTGGTTACAAAGTA-----TTTGAAAAGGCGTGCACTGGGT---------- | ||
| cremanei | GAAGACGTTCTGAAGTCGGAGCCCGTCTTTCCAA-TAT-----TTTGAAACCAGTACT-CATGCAAATGGTTACAAAGTA-----TTCGAAAAGGCGTGCTCTGAGAAGAGCTCTTC | ||
| cbrenneri | -----TTTTCTAGCTCCG----CCGCTTTTTGAGATATGCACCTTTGAAGTTGCCGATAGACACAGACAGTTCAAAGGCGCATATCTCAAAAAGGGGCGGAGCTAGAGAA------- | ||
| ** *** *** * ** ****** * * * *** ** * * ****** * * * | |||
| +++++ +++++++++++++++++++++ +++ +++++++++++++++ +++ ++++++++++++++++ ++++++++++++++++++++++ +++++ | NM_001111027 | ||
| +++++ +++++++++++++++++++++ +++ +++++++++++++++ +++ ++++++++++++++++ ++++++++++++++++++++++ +++++ | NM_001111026 | ||
| +++++ +++++++++++++++++++++ +++ +++++++++++++++ +++ ++++++++++++++++ ++++++++++++++++++++++ +++++ | NM_009822 | ||
| ----- --------------------- --- --------------- --- ---------------- ---------------------- ----- | NM_063364 | ||
| cbriggsae | .((((((((.((((((((((( ((. ((((.((((((.... ... ..)))))).)))).)) .))))))))))).)))))))). | 1.000 -39.60 | |
| cremanei | (((((.(((((....(((((((.((((((((.(( ((( ((((.(((((..... ........))))).))))))) )).)))).)))).)))))))..)))))))))) | 1.000 -42.42 | |
| cbrenneri | .(((((((((((( ((.(((((((((((((((.((((((((.(((..............))))))))))).))))))))))))))).)))))))))))))). | 0.998 -63.54 |
| cbriggsae | chromosome:chrII:3615930:3616009:-1 | Same_strand|Intronic_non-coding|NM_001111027|Runx1t1 ## Opposite_strand|Intronic_coding|NM_063364|F49E12.8 ## {Repeats: no} ## {MIR: cbr-mir-85} |
| cremanei | chromosome:chrUn:7600967:7601071:1 | Opposite_strand|Intronic_coding|NM_001047948 |
| cbrenneri | chromosome:chrUn:147845286:147845386:-1 | intergenic |
cbr-mir-246
| absolute | AF16 |
| cbr-mir-246 5arm | 2 |
| cbr-mir-246 3arm | 10 |
| normalized | AF16 |
| cbr-mir-246 5arm | 0.005 |
| cbr-mir-246 3arm | 0.026 |
sblock39 (miRBase cbr-mir-246) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-246 | 0.001 | no | no | 0.33/0.43 | 20/22/1.00 | 0.0 0.0 | 0.0 0.5 | 2 10 | 0 0 | 1 1 | 0 0 | 17 15 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.10 0.10 | 1 1 | 12 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------UACAUGU-------------------------------------------- | 10 | miR-246 |
| seed | ------------------------------------CCUGGCC-------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------TTACATGTATTGGGTAGGAGC------------------------------- | 21 | 5 | |
| -----------------------------------------------------------------------------TTACATGTATTGGGTAGGAG-------------------------------- | 20 | 5 | |
| -----------------------------------ACCTGGCCAATATTATGTAAT------------------------------------------------------------------------- | 21 | 2 | |
| cbr-miR-246 | -----------------------------------------------------------------------------TTACATGTATTGGGTAGGAGCT------------------------------ | 22 | - |
| cbriggsae | ------------------CCTAGTGATAAAACAGCACCTGGCCAATATTATGTAATA--TCAGAAGCAAATTGATTATTACATGTATTGGGTAGGAGCTGTTCAAGCTATGGT---------------- | ||
| cremanei | GCAGATATTCTGTTCAGTCCAAACAATAGAACAGCACCTGGCCGATTTCATGTAATA--TCTGAAAAGAAAAGA-TATTACATGTATCGGGTAGGAGCTGTTTGAGTAAAGGATCTTTCGAAGGTTTGT | ||
| celegans | ---------------------------------TCGCCTAACCGTTGTCATGTAATATTTCCCAGAGAAAATGA-TATTACATGTTTCGGGTAGGAGC------------------------------- | ||
| cbrenneri | ----------------TCTCGCAAAGTACGAGAGCACCTGGCCGAAATCATGTAATA--TAACAATGAGTTC---TATTACATGTTCCGGGTAGGAGCTGTCG-------------------------- | ||
| ppacificus | -------------CGATTTTGAACATTAAAAGAACA--TGCATAACAAAAAATGAAAGTTATGA--GAACACGAATAATACATGT-TGATGTGGATGTTCT---------------------------- | ||
| * * * * * * * * ** ******* ** * * | |||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001111130 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001106790 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001128722 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069625 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069625 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069822 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069822 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171311 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171311 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_025685 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001011629 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_135592 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_204577 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001046246 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_113174 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171312 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171312 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_013720 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171903 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171903 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001063194 | ||
| cbriggsae | ((((((.....((((((.((((.((((((.((((((((( ((((.......))))).)))))))))))))).)))).))))))...)))).)). | 1.000 -35.80 | |
| cremanei | ((((((.(((......((((........(((((((.((((.(((((..((((((((( (((.........))) ))))))))).))))).)))).))))))).......)))).....))).)))))) | 0.931 -48.16 | |
| celegans | ...((((.(((....(((((((((((.............)) )))))))))...))).))))... | 1.000 -19.82 | |
| cbrenneri | ............(((.(((.((((.(((.((.((((((((( .(((.....))). ))))))))))).))).)))).))).))) | 0.959 -31.50 | |
| ppacificus | .................(((((( (.((((.(((...(((...(((((.. ........))))).))).) )).)))).))))))) | 0.849 -15.50 |
| cbriggsae | chromosome:chrIV:5799923:5800015:-1 | Opposite_strand|Intronic_coding|NM_001111130|CCNRC01 ## Same_strand|Intronic_non-coding|NM_001128722|LOC565233 ## Same_strand|Intronic_coding|NM_069625|ZK596.1 ## Opposite_strand|Intronic_non-coding|NM_025685|Col27a1 ## {Repeats: no} ## {MIR: cbr-mir-246} |
| cremanei | chromosome:chrUn:78899315:78899440:-1 | intergenic |
| celegans | chromosome:chrIV:10940087:10940219:1 | intergenic ## {MIR: cel-mir-246} |
| cbrenneri | chromosome:chrUn:102791838:102791919:-1 | intergenic |
| ppacificus | chromosome:chrUn:141689467:141689549:-1 | Opposite_strand|Intronic_coding|NM_002019 |
cbr-mir-83
| absolute | AF16 |
| cbr-mir-83 5arm | 6 |
| cbr-mir-83 3arm | 4 |
| normalized | AF16 |
| cbr-mir-83 5arm | 0.016 |
| cbr-mir-83 3arm | 0.010 |
sblock41 (miRBase cbr-mir-83) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-83 | 0.002 | no | no | 0.32/0.36 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 6 4 | 0 0 | 1 1 | 0 0 | 16 19 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.14 0.09 | 1 1 | 10 | 1 | 1 | 2 |
| Member of family miR-49/83 (seed AGCACCA): cbr-mir-83, cbr-mir-49 |
| reads | miRBase family seed | ||
| seed | ------------------CUGAGUU------------------------------------------------------------------------------ | 6 | novel |
| seed | ---------------------------------------------------------------AGCACCA--------------------------------- | 4 | miR-49/83 |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------ACTGAGTTTATGTGTGTACTT-G--------------------------------------------------------------- | 22 | 6 | |
| cbr-miR-83 | --------------------------------------------------------------TAGCACCATATAAATTCAGTGT------------------- | 22 | 4 |
| cbriggsae | -GGCACCACTCGAAAAAACTGAGTTTATGTGTGTACTT-GACGGCGATC-AGAGCAACGATCTAGCACCATATAAATTCAGTGTTTTCGTGGACAGAGAGCCA | ||
| cremanei | ----------CGGAAAAACTGAGTTTATGTGTGTACTT-GACGGCCACT-CGAGCAACGATCTAGCACCATATAAATTCAGTATTTTCGTGGA--GAGAG--- | ||
| celegans | ---------------CCACTGAATTTATGTGTGTACTT-GACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAA------------------- | ||
| cbrenneri | AGGCACCACTCGGAAAAACTGAGTTTATTTGAGTACTTAGACGGCCATT-AGAGCAACGATCTAGCACCATATAAATTCAGTATTTTCGTGGAT-GAGAGCCT | ||
| cjaponica | -GGCACC-CTTGGAAGCACTGAGTTTACGTGTGTGCTT-GACGGCCTTCTCGAGCAACGATCTAGCACCATATAAATTCAGTATTTTCGAGTC--GAGAGCC- | ||
| ***** **** ** ** *** ****** ***** ************************* | |||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001014737 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001014738 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001014739 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_080349 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_167375 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_167376 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_014660 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001076831 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001090075 | ||
| +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001030400 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001047939 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_024598 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_009930 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_000092 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_000088 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001007157 | ||
| +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001091797 | ||
| +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214491 | ||
| cbriggsae | (((.((((..(((((.((((((((((((((.((.((. ((((((.... ...))..)).)).)).)))))))))))))))).))))))))).......))). | 0.970 -32.50 | |
| cremanei | ((((((.((((((((((((((.((.((. ((((((.... ...))..)).)).)).)))))))))))))))).)))))).... ..... | 0.985 -25.90 | |
| celegans | ..((((((((((((((.((.((. ((((((........))..)).)).)).)))))))))))))))).. | 0.971 -20.80 | |
| cbrenneri | ((((..((((((((((.(((((((((((.((.((.((.(((((((.... ...))..)).))))).)))).))))))))))).)))))).)).) )...)))) | 0.995 -28.40 | |
| cjaponica | (((... ((((((((.((((((((((..((.(((((. ((((..(((...)))...)).)).)))))))..)))))))))).)))))))).. ....))) | 0.999 -33.50 |
| cbriggsae | chromosome:chrIV:10882747:10882846:-1 | Opposite_strand|Intronic_coding|NM_001014737|up ## Same_strand|Intronic_non-coding|NM_001030400|cnot4 ## Opposite_strand|Intronic_non-coding|NM_024598|C16orf57 ## Same_strand|Intronic_coding|NM_001091797|kif15-b ## {Repeats: no} ## {MIR: cbr-mir-83} |
| cremanei | chromosome:chrUn:43807341:43807426:-1 | intergenic |
| celegans | chromosome:chrIV:7841594:7841733:1 | intergenic ## {MIR: cel-mir-83} |
| cbrenneri | chromosome:chrUn:124901638:124901738:1 | Same_strand|Intronic_coding|NM_073277 |
| cjaponica | chromosome:chrUn:113084166:113084262:-1 | intergenic |
| Back to summary page | confident miRBase miRNAs: | Page 1 | Previous page | Page 4 | Next page | Page 6 |
©2008 InteRNA Genomics B.V.