confident miRBase miRNAs
miRNAknown_cloningOK_randfoldOK (8 loci)
cel-mir-251
| absolute | CE1 |
| cel-mir-251 5arm | 6 |
| normalized | CE1 |
| cel-mir-251 5arm | 0.004 |
block8477 (miRBase cel-mir-251) [miRNAknown_cloningOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-251 | 0.001 | no | no | 0.42/0.50 | 20/24/1.00 | 0.0 | 1.7 | 6 | 0 | 1 | 0 | 18 | 4 | 5arm | 1 | nd | 0.12 | 2 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------UAAGUAG------------------------------------------------------------------------------------------- | 6 | miR-251 |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-251 | --------------------------------------TTAAGTAGTGGTGCCGCTCTTATT--------------------------------------------------------------------------- | 24 | 3 |
| --------------------------------------TTAAGTAGTGGTGCCGCTCTT------------------------------------------------------------------------------ | 21 | 2 | |
| --------------------------------------TTAAGTAGTGGTGCCGCTCT------------------------------------------------------------------------------- | 20 | 1 | |
| celegans | ------------------ACTTTC--AATGACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAGG--TTGAAAAGTAATAAGAGTAGTTCACTACTTATCAAGGTGAAATTTGAAA---TTT--------------- | ||
| cbriggsae | AAATTCTGCTATACTGTTTTGTCCCAAATGACATCTCGTTAAGTAGTGGTGCCGCTCTTATTAGA-ATTATCAAGTAATAAGAGTTGTTCGCTACTTAACGAGAGGAAATTTGGAAAGATGTGTCAGTTGTGAGTTT | ||
| cjaponica | --------------TTCAAATTTCAAATTTGTACCTTGTTAAGTAGTGGTGCCGTTCTTATTAAATCTCAAAAAGTAATAAGAGCTGTTCATTACTTATCAAGGTAAAGTTTGACC---TTTGAG------------ | ||
| cbrenneri | --------------------------------------TTAAGTAGTGGTGCCGCTCTTATTAGA--TGAGATAGTAATAAGAGTTGCTCACTACTTAT-------------------------------------- | ||
| cremanei | --------------TTCTCGTTCC-AAATAACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAGA--ATCCAGAATAATAAGAGTCGCTCACTGCTTATCAAGGTGAAATTTGGGTTTTTGTGAG------------ | ||
| **************** ******** * ********* * ** * **** | |||
| celegans | ..(((( ((....((((((.((((((((((.((..(((((((((.. (....)..)))))))))..)))))))))))).))))).)....)))))) ... | 1.000 -34.80 | |
| cbriggsae | ((((((.(((((((.(((((...((((((....((((((((((((((((.((.((((((((((.. .........)))))))))).))))))))))))))))))....)))))).))))))))).)))...)))))) | 1.000 -50.70 | |
| cjaponica | .(((((..((((((((.(((((((.((((((((((.((.((((((((((............)))))))))).)))))))))))).))))))))))))))).. ))))). | 1.000 -40.70 | |
| cbrenneri | .((((((((((.((.((((((((((.. ........)))))))))).)))))))))))). | 1.000 -24.90 | |
| cremanei | .((.((.((( ((((....(((((.((((((((((.((.((((((((((.. ........)))))))))).)))))))))))).)))))....)))))))....)).)). | 0.998 -41.00 |
| celegans | chromosome:X:11004654:11004750:1 | intergenic ## {SimpF: WRM0620bA05 1 fosmid,WRM0617cF04 1 fosmid,WRM0638bB10 1 fosmid,WRM061aB08 1 fosmid,WRM0611aB01 1 fosmid,WRM0613dB12 1 fosmid,WRM068cG06 1 fosmid,WRM0618bD01 1 fosmid,F59F3.4 1 Expression_profile} ## {MIR: cel-mir-251} |
| cbriggsae | chromosome:chrX:5851551:5851686:-1 | Opposite_strand|Intronic_coding|NM_172925 ## Same_strand|Intronic_coding|NM_007496 ## {MIR: cbr-mir-251} |
| cjaponica | chromosome:chrUn:181820:181927:1 | Same_strand|Intronic_coding|NM_001044093 |
| cbrenneri | chromosome:chrUn:20061413:20061549:-1 | Same_strand|Intronic_coding|NM_001104373 |
| cremanei | chromosome:chrUn:33059029:33059136:1 | Same_strand|Intronic_coding|NM_074370 |
miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK (4 loci)
cel-mir-41
| absolute | CE1 |
| cel-mir-41 5arm | 4 |
| cel-mir-41 3arm | 8 |
| normalized | CE1 |
| cel-mir-41 5arm | 0.003 |
| cel-mir-41 3arm | 0.006 |
sblock22 (miRBase cel-mir-41) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-41 | 0.001 | no | no | 0.45/0.50 | 20/24/1.00 | 0.0 0.0 | 1.0 0.0 | 4 7 | 0 0 | 1 1 | 0 0 | 16 16 | 0 3 | 5arm 3arm | 1 1 | nd nd | 0.09 0.10 | 2 1 | 12 | 1 | 3 | 1 |
| Located in cluster 1: cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-38, cel-mir-39, cel-mir-40, cel-mir-41 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-40, cel-mir-35, cel-mir-36, cel-mir-37, cel-mir-39, cel-mir-41, cel-mir-38 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------CACCGGG--------------------------------------------- | 8 | miR-35/36/38/39/40/41 |
| seed | -------------------------------------GUGGUUU------------------------------------------------------------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------------TCACCGGGTGAAAAATCACCT-------------------------------- | 21 | 7 | |
| ------------------------------------GGTGGTTTTTCTCTGCAGTGAT----------------------------------------------------------------------------------- | 22 | 2 | |
| ------------------------------------GGTGGTTTTTCTCTGCAGTG------------------------------------------------------------------------------------- | 20 | 1 | |
| ------------------------------------GGTGGTTTTTCTCTGCAGTGATA--------G------------------------------------------------------------------------- | 24 | 1 | |
| cel-miR-41 | ----------------------------------------------------------------------------------------TCACCGGGTGAAAAATCACCTA------------------------------- | 22 | 1 |
| celegans | -----------------GGGTCCCAGA---GACCTTGGTGGTTTTTCTCTGCAGTGATA--------GATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGTCTGGAGCCTCCT---------------- | ||
| cbriggsae | -------------------GTCCCAAA---TGCCTTGGTGGTTTTTCGCCGTAGTGATA--------CAACATCGAAGCCATACGATATCACCGGGTGAAAAACTCCCAAGGTCGGGAC---------------------- | ||
| cjaponica | -------------------GTCCAGAATTAGACACTGGCTGGTATCCGCGATGGTGTTA--------CACTACTGTAAT------GTATCACCGGGTGGAAACTTGCAAGTGTCTCCAACTGGAT---------------- | ||
| cbrenneri | TGGAAGGTGAGTTTAGCAGGTCTTGT----GACCTCGGTGGTTTCTTGCCGCGGTGATATGCACATTCACTTCCATAAT----TGATATCACCGGGTGAAAAATCACCAAGGTCGACGATTCTGTTCTATTTTTTCTCGCA | ||
| cremanei | -GAAAGGTAAGTTTAACAGGTCCCCAT---GACCTTGGTAGTTTTCCGCCGCAGTGATA--------TACCATCA-ATCAAAACGATATCACCGGGTGAAAAACTACCAAGGTCGGGTCACCTGTCCTTTT---------- | ||
| *** * ** * * * *** ** * * ************ *** * *** | |||
| ----- ---------- ----------------------------- ---------------------------------------------------------- ----- | Y62F5A.9 Y62F5A.9 Y62F5A.9 | ||
| celegans | ((.(((...( (((((.(((((((((((((((..(((((( (.................))))))))))).))))))))))).))))))))).)).... | 1.000 -40.93 | |
| cbriggsae | (((((... .(((((((..((((((((((...(((((( .....(((........)))))))))..))))))))))..))))))).))))) | 0.990 -40.50 | |
| cjaponica | ((((((....(((((((.((.(((.(((((..(((((.(( ((.........) ))).))))).))))).))).)).)))))))....)))))) | 1.000 -40.00 | |
| cbrenneri | ......(((((...((((((..(((( (((((.((((((((.(((((.(((((((((.((................ )))))))))))))))).)))))))).))))).)))).)))))).........))))). | 0.999 -48.79 | |
| cremanei | ((((((........((((((..((.( (((((((((((((((.((((...(((((( (....... .........)))))))..)))).))))))))))))))))))..)))))))))))) | 0.997 -51.19 |
| celegans | chromosome:II:11538224:11538320:1 | Opposite_strand|Intronic_coding|Y62F5A.9|Y62F5A.9 ## Y62F5A.9|protein_coding|Y62F5A.9|Y62F5A.9 [Source:RefSeq_peptide;Acc:NP_741048] ## {SimpF: Y62F5A.D 1 Expression_profile} ## {MIR: cel-mir-41} |
| cbriggsae | chromosome:chrII:7536503:7536591:1 | Opposite_strand|Intronic_coding|NM_177732 ## Same_strand|Intronic_coding|NM_001101718 ## Opposite_strand|Boundary_coding|NM_171042 ## {MIR: cbr-mir-41} |
| cjaponica | chromosome:chrUn:117591227:117591318:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| cbrenneri | chromosome:chrUn:41613113:41613245:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Intronic_coding|NM_171042 |
| cremanei | chromosome:chrUn:8778361:8778478:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
cel-mir-789
| absolute | CE1 |
| cel-mir-789 5arm | 10 |
| cel-mir-789 3arm | 18.333 |
| normalized | CE1 |
| cel-mir-789 5arm | 0.007 |
| cel-mir-789 3arm | 0.013 |
sblock41 (miRBase cel-mir-789-1) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-789-1 | 0.001 | no | no | 0.43/0.59 | 21/23/1.00 | 0.0 0.0 | 0.0 0.3 | 3 17 | 0 0 | 1 1 | 0 0 | 16 15 | 4 7 | 5arm 3arm | 1 2 | nd nd | 0.13 0.13 | 1 1 | 22 | 1 | 2 | 2 |
| Member of family novel5 (seed AUUGAUG): cel-mir-789, cel-mir-789 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------CCCUGCC----------------------------------------------------- | 17 | miR-789a/789b |
| seed | ----------------------------------------AUU-------GAUG----------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | -------------------------------------------------------------------------------------------------CUGCCUG--------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-789 | ----------------------------------------------------------------------------------------------TCCCTGCCTGGGTCACCAA----------TTG-----T----------------------- | 23 | 12 |
| ----------------------------------------------------------------------------------------------TCCCTGCCTGGGTCACCAA----------TTG----------------------------- | 22 | 5 | |
| ---------------------------------------AATT-------GATGACCCAGACAAGG---ACT----------------------------------------------------------------------------------- | 23 | 3 | |
| ------------------------------------------------------------------------------------------------CCTGCCTGGGTCACCAA----------TTG-----T----------------------- | 21 | 2 | |
| celegans | -----------------------TGTCCTGAAGGCAGGCAATT-------GATGACCCAGACAAGG---ACTAATCAAGATT--GTCGATCTAGTCCCTGCCTGGGTCACCAA----------TTG-----TCGGCCCCCGCGGGCA-------- | ||
| cremanei | --------------------------------------CGAAT-------GGTAGCCGAGGAAGGGT--ATCTAGAAAGA------AGGATTA--CCCTGCCTGGGTCACCAT----------TTG----------------------------- | ||
| cbrenneri | ---------------------CTTTTCCTGCA-----ACAGTTTCAGCAGGGTGACCCAGACAACGCTGAGTGATAAAGAG--------------CCCTGCCTGGGTCACCATGCTGCAACTGTTG-----CTGGTCTCAAAG------------ | ||
| cjaponica | GTCAAACGAGGTTAGTGCAACCTTTTCA---------ACAGTT-------GGTGACCCAGGAAGGG---ATTAGAAAAGATTTCACAAGTTCAATCCCTGCCTGGGTCACCAA----------TTGTTGAATTGGTTTCACAAAATGGTCAAGAC | ||
| * * * * ** ** * * * **** ***************** *** | |||
| ----- -------------------- ---------------- ------------- ----------------------------- --- ---------------- ----- | Y51H4A.25a Y51H4A.25 Y51H4A.25 | ||
| celegans | .((((((..(((.((((((( (.((((((((.((.(( (((((((...... ...))).)))))).)).)))))))).))) ))) )).)))..)).)))). | 1.000 -49.10 | |
| cremanei | ((((( (((..((.(((.((((( ((((....... .)))).) )))).))).))..))))) ))) | 1.000 -30.80 | |
| cbrenneri | .....((.((( ((((((.(((((.((((((((((.((..(((...........)) )..)).)))))))))).))))).)))))))) ).))........ | 0.997 -49.20 | |
| cjaponica | ..............(((.((((..(((( (((((( (((((((((((.(((( (((.(((.............)))))))))).))))))))))))) ))))))))..)))).))).............. | 0.856 -60.42 |
| celegans | chromosome:IV:16740652:16740748:-1 | Opposite_strand|Intronic_coding|Y51H4A.25a|Y51H4A.25 ## Opposite_strand|Boundary_non-coding|Y51H4A.25b|Y51H4A.25 ## Y51H4A.25|protein_coding|Y51H4A.25|Y51H4A.25a [Source:RefSeq_peptide;Acc:NP_001023481] ## {SimpF: WRM0633dG08 -1 fosmid,WRM065dA07 -1 fosmid,WRM0637bA03 -1 fosmid,WRM0625aG02 -1 fosmid,WRM0621bE04 -1 fosmid} ## {MIR: cel-mir-789-1} |
| cremanei | chromosome:chrUn:52159843:52159979:-1 | Opposite_strand|Intronic_coding|NM_071305 ## Same_strand|Intronic_coding|NM_071724 |
| cbrenneri | chromosome:chrUn:149438430:149438527:1 | intergenic |
| cjaponica | chromosome:chrUn:75784925:75785050:-1 | Same_strand|Intronic_coding|NM_001047261 |
cel-mir-791
| absolute | CE1 |
| cel-mir-791 5arm | 14 |
| cel-mir-791 3arm | 2 |
| normalized | CE1 |
| cel-mir-791 5arm | 0.010 |
| cel-mir-791 3arm | 0.001 |
sblock74 (miRBase cel-mir-791) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-791 | 0.001 | no | no | 0.42/0.55 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 9 2 | 0 0 | 1 1 | 0 0 | 12 11 | 6 7 | 5arm 3arm | 1 1 | nd nd | 0.13 0.22 | 2 2 | 16 | 1 | 2 | 1 |
| Member of family miR-790/791 (seed UUGGCAC): cel-mir-791, cel-mir-790 |
| reads | miRBase family seed | ||
| seed | ----------------CCUUAUC----------------------------------------------------------------------------------- | 12 | novel |
| seed | ---------------ACCUUAU------------------------------------------------------------------------------------ | 2 | novel |
| seed | ---------------------------------------------------------UUGGCAC------------------------------------------ | 2 | miR-790/791 |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------ACCTTATCCGTTGTAGCCAAAGT-------------------------------------------------------------------- | 23 | 9 | |
| --------------------------------------------------------TTTGGCAC-TCCGCAGATAAGGC--------------------------- | 22 | 2 | |
| --------------TACCTTATCCGTTGTAGCCAAAGT-------------------------------------------------------------------- | 24 | 2 | |
| ---------------ACCTTATCCGTTGTAGCCAA----------------------------------------------------------------------- | 20 | 1 | |
| ---------------ACCTTATCCGTTGTAGCCAAAGTT------------------------------------------------------------------- | 24 | 1 | |
| ---------------ACCTTATCCGTTGTAGCCAAAG--------------------------------------------------------------------- | 22 | 1 | |
| cel-miR-791 | --------------------------------------------------------TTTGGCAC-TCCGCAGATAAGGCA-------------------------- | 23 | - |
| celegans | ---GAACCTTCGATTACCTTATCCGTTGTAGCCAAAGTTCAACGAAGC--GGCAACTTTGGCAC-TCCGCAGATAAGGCAATCGATTGT----------TT----- | ||
| cbrenneri | CTACAATTCTCAGTTACCTTATCACGTGTTGCTAAAGTTCAATACATTTAGTGAACTTTGGCAC-AACGCTGATTAGGTGACTGATTAT----------TTTGTAG | ||
| ppacificus | ---------------ACCTTATC------------------------------GGCTTTGTCGCATTCACCGATGACGTCAGTAATTACGACGATCTCATTAAGGT | ||
| ******** ***** * * * * *** * * * *** ** | |||
| celegans | ((((..((((((.(((((((((..((.(((((((((...((...) )..))))))))))) ..))..))))))).))))))..)) )) | 1.000 -32.70 | |
| cbrenneri | ((((((...((((((((((.(((((((..((((((((((((.((....)).)))))))))))). .))).)))).)))))))))).... .)))))) | 1.000 -42.00 | |
| ppacificus | ((((((.. ((..((((((.....((.(((...))).)).....))))))..))..)))))) | 0.826 -14.00 |
| celegans | chromosome:X:5809309:5809393:1 | intergenic ## {SimpF: WRM064cC12 1 fosmid,WRM0626cF01 1 fosmid,WRM0618aE12 1 fosmid,WRM067cH03 1 fosmid,WRM063cG10 1 fosmid,WRM065bC09 1 fosmid,WRM0633bF12 1 fosmid,WRM0637bH01 1 fosmid,WRM0627bH09 1 fosmid,WRM068aC04 1 fosmid,WRM0640cA03 1 fosmid} ## {MIR: cel-mir-791} |
| cbrenneri | chromosome:chrUn:4065011:4065105:1 | intergenic |
| ppacificus | chromosome:chrUn:5248391:5248515:-1 | intergenic |
cel-mir-49
| absolute | CE1 |
| cel-mir-49 5arm | 3 |
| cel-mir-49 3arm | 13 |
| normalized | CE1 |
| cel-mir-49 5arm | 0.002 |
| cel-mir-49 3arm | 0.009 |
sblock77 (miRBase cel-mir-49) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-49 | 0.002 | no | no | 0.52/0.58 | 19/23/0.82 | 0.0 0.0 | 0.0 0.5 | 3 13 | 0 0 | 1 1 | 0 0 | 20 16 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.17 0.10 | 2 1 | 16 | 1 | 1 | 1 |
| Member of family miR-49/83 (seed AGCACCA): cel-mir-49, cel-mir-83 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------AGCA--------CCA--------------------------------------------------- | 13 | miR-49/83 |
| seed | --------------------------------------GCAG-UUU---------------------------------------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------AAGCA--------CCACGAGAAGCTGCAG-------------------------------------- | 21 | 10 | |
| -------------------------------------CGCAG-TTTGTTGTGATGTGCTCC------------------------------------------------------------------------------------- | 23 | 3 | |
| -------------------------------------------------------------------------------AAGCA--------CCACGAGAAGCTGC---------------------------------------- | 19 | 3 | |
| cel-miR-49 | -------------------------------------------------------------------------------AAGCA--------CCACGAGAAGCTGCAGA------------------------------------- | 22 | - |
| celegans | ---------------TTTTGAAAAAG--ACCACCGTCCGCAG-TTTGTTGTGATGTGCTCCAAGCAATC-ATGAGTCTGAAGCA--------CCACGAGAAGCTGCAGATGGAG-----------------GTTCTGATTT----- | ||
| cbriggsae | ---------TATTTGAACCGAAACCA--TTTGCCATCCGCAG-TTTTTTGTAGTGTGCTCCGCGCCATCTTAGTGCCCGAAGCA--------CCACGAGAAGCTGCAGATGGAA-----------------GTTTTGGTTGATGTG | ||
| cjaponica | GGCAAGGTAAGTTTGCTCCGAAGCCGTCACTTCCATCCGCAGTTTTTTTGTGCTGTGCTCCGAACC--C-GAGTGGTCGAAGCA--------CCACGAGAAGCTGCAGATGGGATGAGAGCGGCGATTTGTGTTTTGTTTTGTT-- | ||
| cbrenneri | -----------TGAGTTTAGAAACAG--TTGGCCGTCCGCGGTTTTTTTGTGTAGTGCTCCGCACCATC-GAGTGTTCGAAGCA--------CCACGAGAAGCTGCAGATGGAG-----------AAGCTTGTTTCCGTTCTTA-- | ||
| ppacificus | -------------------------------------TGCAG----TTTATGAGATTTCCAACAAAAAT-GAATGAATAATTCAAATGAAATCTTAAGGAAACTGCA--------------------------------------- | ||
| cremanei | ------------------------------------CCGCAG-TTTCTTATGATGTGCTCCGAGCCAAC-ATGTGTTCGAAGCA--------CCACGAGAAGCTGCAG-------------------------------------- | ||
| ** * ** * * * * * ** * *** ***** | |||
| celegans | ..........( (((.(((((.(((( (((.(((((..(((((.((..(.... ....)..)).)))) )))))).))))))).))))).) )))....... | 1.000 -38.50 | |
| cbriggsae | ......(((((((((.. ....(((((.(((( ((((((((.((((.....((((.......)))).....))) ).)))))))))))).))))).. )))))))))...... | 0.995 -43.40 | |
| cjaponica | .((((..((((..(((......(((((((.(((((((.((((.(((((((((..(((((.((.((( . ....))))).)))) )))))))))))))).)))))))))...))))).....))).))))..)))). | 0.972 -50.20 | |
| cbrenneri | ((((....((((((( ((..(((((.((((.(((((((((..(((((.(((((.... ..)))..)).)))) )))))))))))))).))))).. .)))).)))))....)))) | 0.998 -40.90 | |
| ppacificus | .(((( (((.(((((((((.........( ((((.....)))))...)))))))))...))))))). | 0.833 -18.30 | |
| cremanei | ..(((( (((((..((..(((((.(((((((.. .)).))))).)))) )))..))))))))).. | 1.000 -29.70 |
| celegans | chromosome:X:9989216:9989312:1 | intergenic ## {SimpF: WRM062cG02 -1 fosmid,WRM0636bB03 -1 fosmid,WRM069bG05 -1 fosmid,WRM0618aC08 1 fosmid} ## {MIR: cel-mir-49} |
| cbriggsae | chromosome:chrX:3590180:3590288:-1 | Same_strand|Intronic_coding|NM_001027419 ## Opposite_strand|Intronic_coding|NM_181874 ## {MIR: cbr-mir-49} |
| cjaponica | chromosome:chrUn:761221:761353:1 | intergenic |
| cbrenneri | chromosome:chrUn:21067423:21067533:-1 | intergenic |
| ppacificus | chromosome:chrUn:113208891:113209027:1 | Opposite_strand|Intronic_coding|NM_076149 |
| cremanei | chromosome:chrUn:14818084:14818220:-1 | intergenic |
miRNAknown_cloningHIGH_multiarm_DicerOK (3 loci)
cel-mir-51
| absolute | CE1 |
| cel-mir-51 5arm | 255 |
| cel-mir-51 3arm | 26 |
| normalized | CE1 |
| cel-mir-51 5arm | 0.178 |
| cel-mir-51 3arm | 0.018 |
sblock39 (miRBase cel-mir-51) [miRNAknown_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-51 | 0.024 | no | no | 0.45/0.57 | 18/24/0.94 | 0.0 0.0 | 0.0 0.0 | 217 25 | 0 0 | 1 1 | 0 0 | 16 23 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.17 0.19 | 1 1 | 281 | 1 | 2 | 1 |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-53, cel-mir-51, cel-mir-55, cel-mir-54, cel-mir-56, cel-mir-52 |
| reads | miRBase family seed | ||
| seed | -----------------ACCCGUA--------------------------------------------------------------------------------- | 247 | miR-51/52/55 |
| seed | --------------------------------------------------------------AUGGAAG------------------------------------ | 26 | novel |
| seed | ---------------------GUAGCUC----------------------------------------------------------------------------- | 4 | novel |
| seed | ------------------CCCGUAG-------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------CGUAGCU------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-51 | ----------------TACCCGTAGCTCCTATCCATGTT------------------------------------------------------------------ | 23 | 217 |
| -------------------------------------------------------------CATGGAAGCAGGTACAGGTGC----------------------- | 21 | 25 | |
| ----------------TACCCGTAGCTCCTATCCATGT------------------------------------------------------------------- | 22 | 11 | |
| ----------------TACCCGTAGCTCCTATCCA---------------------------------------------------------------------- | 19 | 10 | |
| ----------------TACCCGTAGCTCCTATCCATG-------------------------------------------------------------------- | 21 | 4 | |
| ----------------TACCCGTAGCTCCTATCC----------------------------------------------------------------------- | 18 | 3 | |
| --------------------CGTAGCTCCTATCCATGTT------------------------------------------------------------------ | 19 | 3 | |
| -----------------ACCCGTAGCTCCTATCCATGTT----A------------------------------------------------------------- | 23 | 3 | |
| -------------------CCGTAGCTCCTATCCATGTT------------------------------------------------------------------ | 20 | 1 | |
| ----------------TACCCGTAGCTCCTATCCAT--------------------------------------------------------------------- | 20 | 1 | |
| ----------------TACCCGTAGCTCCTATCCATGTT----A------------------------------------------------------------- | 24 | 1 | |
| --------------------CGTAGCTCCTATCCATGTT----A------------------------------------------------------------- | 20 | 1 | |
| -------------------------------------------------------------CATGGAAGCAGGTACAGG-------------------------- | 18 | 1 | |
| celegans | GTCCGAAAAGTCCGTCTACCCGTAGCTCCTATCCATGTT----ACTGGTCAAA-AAGTGAACATGGAAGCAGGTACAGGTGCACGGCGAGTAGGGTCATGAAGCT | ||
| cjaponica | ----------------TACCCGTAGCTCCTATCCATGTTGATAAGTTATCACA-ATGCCAACATGGAAGCAGGTACTGGTG------------------------ | ||
| cbrenneri | ----------------TACCCGTAGCTCCTATCCATGTT-----GTTATCAAAGAAGTCAACATGGAAGTTGGTACCGGTG------------------------ | ||
| *********************** * *** * * * ********** ***** **** | |||
| celegans | ((((.....(.((((.((((.(((.((.((.(((((((( (((....... .)))).))))))))).)).))).)))).))))).....))).)........ | 1.000 -33.30 | |
| cjaponica | ((((.(((.((.((.(((((((((............. ....))))))))))).)).))).)))) | 1.000 -20.93 | |
| cbrenneri | ...(((..(((....(((((((( (.............)))))))))....)))..))).. | 1.000 -16.92 |
| celegans | chromosome:IV:11025983:11026082:-1 | intergenic ## {SimpF: WRM0616dB12 -1 fosmid,WRM063bC05 -1 fosmid,WRM0641dF09 -1 fosmid,WRM064bF06 -1 fosmid} ## {MIR: cel-mir-51} |
| cjaponica | chromosome:chrUn:59536079:59536218:-1 | Opposite_strand|Intronic_coding|NM_059487 |
| cbrenneri | chromosome:chrUn:102735922:102736061:1 | intergenic |
cel-mir-241
| absolute | CE1 |
| cel-mir-241 5arm | 36 |
| cel-mir-241 3arm | 4 |
| normalized | CE1 |
| cel-mir-241 5arm | 0.025 |
| cel-mir-241 3arm | 0.003 |
sblock59 (miRBase cel-mir-241) [miRNAknown_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-241 | 0.017 | no | no | 0.45/0.50 | 19/22/0.95 | 0.0 0.0 | 0.0 1.5 | 35 4 | 0 0 | 1 1 | 0 0 | 15 15 | 8 10 | 5arm 3arm | 1 1 | nd nd | 0.10 0.16 | 1 1 | 40 | 1 | 1 | 2 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cel-mir-795, cel-mir-48, cel-mir-241, cel-let-7, cel-mir-84 |
| reads | miRBase family seed | ||
| seed | ------------------------------------G-----AGGUAG------------------------------------------------------------------------------------------------ | 36 | miR-241/48/let-7/84 |
| seed | -------------------------------------------------------------------------------------UUGU-----CUC----------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------TG-----AGGTAGGTGCGAGAAATG------------------------------------------------------------------------------------ | 20 | 35 | |
| ------------------------------------------------------------------------------------ATTGT-----CTCTCAGCTGCTTCATC--------------------------------- | 22 | 2 | |
| ------------------------------------------------------------------------------------ATTGT-----CTCTCAGCTGCTTC------------------------------------ | 19 | 2 | |
| cel-miR-241 | -----------------------------------TG-----AGGTAGGTGCGAGAAATGA----------------------------------------------------------------------------------- | 21 | 1 |
| celegans | --------------------CGGGGGTGTCAAAGTTG-----AGGTAGGTGCGAGAAATGACGGCATCCATATAGTAATCGTTCATTGT-----CTCTCAGCTGCTTCATCTGTGACATGGCTACG------------------ | ||
| cbriggsae | CAAAGTAAGTTTAGAACCATTCGGGATGTTGAGGTAGGC--TCAGTAGATGCGAGGAGATCCACCATTCCTCACATCGTCTGTCCTAACTCGCCTTCCCTTGTGCTTCAATATTTCTTTTG----------------------- | ||
| cjaponica | --------------TTGCCGCTGGGGTGTCAAAGTTG-----AGGTAGGTGCGAGAAATGACGAGAATCATCCAAATCGCGCTCATTGC-----CTCCAATCTGCCTCGACTGGGACGCTC----------------------- | ||
| cbrenneri | -----------GCAAAAAACAAGGGGTGTCAAAGTAG-----AGGTAGGTGCGAGAAATGACGGGCATCGTGCAA--ATCGTTCATTGT-----CTCCCAGCTACTTCAACTGTGATTTCAACCCTTTGAATTGACTTTTTTGT | ||
| ppacificus | ------------TTGATTGTCTGGGAGAGAGAAGAAGGAAAGAGGTAGGGCGGAGGAGAGCAGGTAGATCACTAGCCTCCTCTCGGCCT----CTTCCTAACTCCGTCCATCGAACGGTAGTCAA------------------- | ||
| cremanei | -----------------------------------AG-----AGGTAGGTGCGAGAAATGACGGAACCTCACAAATCATCGTTCATTGT-----CTCGCAGCTGCTTCA----------------------------------- | ||
| * **** *** * * ** ** * * ** | |||
| celegans | .((..((((((.((.(( ((((((.((.((((((((((((...(......)...))).))))).) ))).)).)))))))).)).))))))..))... | 1.000 -33.40 | |
| cbriggsae | (((((.((((...(((.(((..((((...((((.((((. .(((..((((.((((((........)))))).))))..))).)))).))))...))))..))).)))...)))).))))) | 1.000 -39.00 | |
| cjaponica | .........(((((((..((((( (((((((((.(((.(((((((.((..........)).)).))))).. ))))).))))))))))))..))))))) | 0.972 -39.90 | |
| cbrenneri | ((((((((((((((((((((.(((.( ((((((.((.(((((((((((.((.....)).. ..))).)))).) ))).)).))))))).))).))))....)))))))).......)))))))) | 0.995 -42.81 | |
| ppacificus | .((((((.(((...((..((....(((...(((.(((.((((((((.((.(((.....))).)))))))).)).))) ...)))...))).))..))...))))))))). | 0.995 -41.30 | |
| cremanei | .( ((((((.(((((((((((((((..............)))).)))).) )))))).))))))). | 1.000 -27.24 |
| celegans | chromosome:V:14366166:14366261:-1 | intergenic ## {SimpF: WRM0636cG07 -1 fosmid} ## {MIR: cel-mir-241} |
| cbriggsae | chromosome:chrV:12275573:12275691:1 | Opposite_strand|Intronic_coding|NM_074155 ## Same_strand|Intronic_coding|NM_001113262 ## {MIR: cbr-mir-48} |
| cjaponica | chromosome:chrUn:25919622:25919718:-1 | Same_strand|Intronic_coding|NM_001004193 |
| cbrenneri | chromosome:chrUn:94388181:94388301:-1 | intergenic |
| ppacificus | chromosome:chrUn:79364397:79364505:-1 | Opposite_strand|Intronic_coding|NM_001091302 |
| cremanei | chromosome:chrUn:140421350:140421485:1 | Opposite_strand|Intronic_coding|NM_182407 |
cel-mir-240
| absolute | CE1 |
| cel-mir-240 5arm | 6 |
| cel-mir-240 3arm | 25 |
| normalized | CE1 |
| cel-mir-240 5arm | 0.004 |
| cel-mir-240 3arm | 0.017 |
sblock75 (miRBase cel-mir-240) [miRNAknown_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-240 | 0.021 | no | no | 0.43/0.57 | 21/23/1.00 | 0.0 0.4 | 0.0 0.0 | 6 23 | 0 0 | 1 1 | 0 0 | 21 15 | 1 3 | 5arm 3arm | 1 1 | nd nd | 0.17 0.22 | 1 1 | 31 | 1 | 2 | 2 |
| Located in cluster 10: cel-mir-240, cel-mir-786 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------ACUGGCC---------------------------------------------- | 14 | miR-240 |
| seed | ---------------------------------------------------------------------------------UACUGGC----------------------------------------------- | 11 | novel |
| seed | -------------------------------GAGGAUU------------------------------------------------------------------------------------------------- | 6 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-240 | ---------------------------------------------------------------------------------TACTGGCCCCCAAATCTTCGCT-------------------------------- | 22 | 13 |
| --------------------------------------------------------------------------------ATACTGGCCCCCAAATCTTCGCT-------------------------------- | 23 | 10 | |
| ------------------------------CGAGGATTTTGAGA-----CTAGAATGC----------------------------------------------------------------------------- | 23 | 6 | |
| --------------------------------------------------------------------------------ATACTGGCCCCCAAATCTTCGC--------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------------------------TACTGGCCCCCAAATCTTCGC--------------------------------- | 21 | 1 | |
| celegans | -TTGTTAGAAACTTT------TTCA--AATCGAGGATTTTGAGA-----CTAGAATGCTTGAATTG-T------ACTAGCATACTGGCCCCCAAATCTTCGCTTAGAAA-----------TACAGTTCA------ | ||
| cbriggsae | ---------------------TTCA--AATCGAGAATTTCGAGG-----CCTGAATGCAAGAACCGTT------TTGAGCATACTGGCCTCCAAATTTTCGCTTTGAA--------------------------- | ||
| cbrenneri | ---------ATTTTTTCACATTTCATTAGTTGACACCTTTTTGATAGCTCTGACAACCGAGATATGCTGCTCTGAAAAGTATAGTACTGGCCAGAACTTATCATTAAAGGCGCACGCTCTTGTTGTTCAAAAAAT | ||
| cjaponica | ATTTCCAGCGATTTTCTGATTTTCG--AATCGAGGATTTCACGG-----CTAGAATGCAAGAT-----------AAAAGCATACTGGCCCTCAAATCTTCGCTTCGAA-------------CTTTGGAAGGAGGT | ||
| *** * * ** ** * * * * ** ** *** * ** * ** * * ** | |||
| celegans | ......(((....( (((. ((.(((((((((.(.(. ((((.(((((....... . ...))))).)))).).).))))))))).)).)))) .....))). | 1.000 -23.60 | |
| cbriggsae | .((( ((.(((((((((.(((( ((...((((..(((....) ))..))))...)))))).))))))))).))))). | 1.000 -30.00 | |
| cbrenneri | (((((((.(((...((..(((((...(((((.((((((.((((....((.((...(((((..((....))..))))))))).)))).)).))))..)))))..)).)))..)).)))..))))))) | 0.985 -24.00 | |
| cjaponica | ((((((.......((((((..(((( ((.(((((((((...(( ((((.((((..... ....)))).))))))...))))))))).)))))) ..)))))))))))) | 0.973 -38.11 |
| celegans | chromosome:X:7882567:7882663:1 | intergenic ## {SimpF: WRM064aB09 1 fosmid,WRM0621bE08 1 fosmid,WRM0633bB07 1 fosmid,WRM065dC03 1 fosmid,WRM0619cA11 1 fosmid,WRM0633cC10 1 fosmid,WRM0611bE01 1 fosmid,WRM0618bB10 1 fosmid} ## {MIR: cel-mir-240} |
| cbriggsae | chromosome:chrX:13573454:13573527:1 | Opposite_strand|Intronic_coding|NM_003107 ## Same_strand|Intronic_coding|NM_177736 ## {MIR: cbr-mir-240} |
| cbrenneri | chromosome:chrUn:57936576:57936701:1 | Same_strand|Intronic_coding|NM_001027175 |
| cjaponica | chromosome:chrUn:133447595:133447698:1 | Opposite_strand|Intronic_coding|NM_001099115 |
miRNAknown_cloningHIGH_shortStem_mirtron_randfoldOK (1 loci)
cel-mir-62
| absolute | CE1 |
| cel-mir-62 3arm | 36 |
| normalized | CE1 |
| cel-mir-62 3arm | 0.025 |
block8513 (miRBase cel-mir-62) [miRNAknown_cloningHIGH_shortStem_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-62 | 0.001 | no | no | 0.26/0.32 | 18/22/0.86 | 0.0 | 0.8 | 31 | 0 | 1 | 0 | 0 | 6 | 3arm | 1 | 0 | 0.15 | 2 | 36 | 1 | na | na |
| Member of family miR-50/62/90 (seed GAUAUGU): cel-mir-50, cel-mir-90, cel-mir-62 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------GAUAUGU----------------- | 36 | miR-50/62/90 |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------TGATATGTAATCTAGCTTAC----- | 20 | 19 | |
| cel-miR-62 | -------------------------------------------------TGATATGTAATCTAGCTTACAG--- | 22 | 12 |
| -------------------------------------------------TGATATGTAATCTAGCTT------- | 18 | 4 | |
| -------------------------------------------------TGATATGTAATCTAGCTTA------ | 19 | 1 | |
| celegans | -------------GTGAGTTAGATCTCATATCCTTCCGCAAAATGGAAATGATATGTAATCTAGCTTACAG--- | ||
| cbriggsae | ----TATTATAAGGTGGGTTAGATCCCATATCCTTCCGCTTGATGGAAATGATATGTAATCTAGCTTACAG--- | ||
| cjaponica | -----------TGGTGAGTTAGATCTCATATCCTTCCGGAAAATGGAAATGATATGTAATCTAGCTTACAG--- | ||
| cbrenneri | CAGCTATAGTAAGGTGAGTTAGATATCGTATCCTTCCGCTTAATGGTAATGATATGTAATCTAGCTTACAG--- | ||
| ppacificus | ACCCTTCTTTA---------------CATATCGTCTCGCTCGAGCGAGACGATATGTAA---AGACCCTAGGGA | ||
| * **** * ** * * * ********* ** ** | |||
| >>>>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >>>>> | T07C5.1b T07C5.1 ugt-50 | ||
| >>>>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >>>>> | T07C5.1c T07C5.1 ugt-50 | ||
| celegans | (((((((((((..((((((.(((((.....)))))..))))))..))))))))))).. | 1.000 -25.10 | |
| cbriggsae | .........(((((((((((..((((((.(((((.....)))))..))))))..))))))))))).. | 0.999 -24.60 | |
| cjaponica | ..(((((((((((..((((((.(((((.....)))))..))))))..))))))))))).. | 1.000 -25.90 | |
| cbrenneri | .............(((((((((((..((((((.(((((.....))).)).))))))..))))))))))).. | 0.802 -21.40 | |
| ppacificus | .(((((((((( (((((((((((((....)))))))))))))))) )))....)))). | 0.999 -36.90 |
| celegans | chromosome:X:12692527:12692584:1 | Same_strand|Boundary_coding|T07C5.1b|T07C5.1 ## T07C5.1|protein_coding|ugt-50|Putative UDP-glucuronosyltransferase ugt-50 precursor (EC 2.4.1.17) (UDPGT 50). [Source:UniProtKB/Swiss-Prot;Acc:Q22295] ## {SimpF: WRM0629cB08 1 fosmid,WRM065cE04 1 fosmid,yk373g4 1 RNAi,WRM0640cH04 1 fosmid,WRM0626bF03 1 fosmid,WRM0620dC05 1 fosmid,WRM0637dE05 1 fosmid,WRM0621dD06 1 fosmid,WRM0639bE12 1 fosmid,WRM0612dC12 1 fosmid,WRM0610cA02 1 fosmid} ## {MIR: cel-mir-62} |
| cbriggsae | chromosome:chrX:14261109:14261206:-1 | Opposite_strand|Intronic_coding|NM_001004313 ## Same_strand|Boundary_coding|NM_171786 ## {MIR: cbr-mir-62} |
| cjaponica | chromosome:chrUn:27040326:27040423:1 | Same_strand|Intronic_coding|NM_171786 |
| cbrenneri | chromosome:chrUn:45267793:45267890:-1 | Opposite_strand|Intronic_coding|NM_001107906 ## Same_strand|Boundary_coding|NM_077717 |
| ppacificus | chromosome:chrUn:174340299:174340396:-1 | intergenic |
miRNAknown_multiarm_DicerOK_randfoldOK (1 loci)
cel-mir-245
| absolute | CE1 |
| cel-mir-245 5arm | 1 |
| cel-mir-245 3arm | 3 |
| normalized | CE1 |
| cel-mir-245 5arm | 0.001 |
| cel-mir-245 3arm | 0.002 |
sblock7 (miRBase cel-mir-245) [miRNAknown_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-245 | 0.001 | no | no | 0.39/0.55 | 22/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 12 11 | 5 5 | 5arm 3arm | 1 1 | nd nd | 0.26 0.18 | 3 3 | 4 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------UUGGUCC---------------------------------------------- | 3 | miR-245 |
| seed | ---------------------------------CUAUUUG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-245 | -------------------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC-------------------------------- | 22 | 3 |
| --------------------------------GCTATTTGCAAGGTACCTAATTG------------------------------------------------------------------------ | 23 | 1 | |
| celegans | --------------------CAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGT--------------------- | ||
| cbriggsae | -----GAAATGGATTGTATTCAATGTCGAAGAGCTGCTTGCAAGGTACCTAATTGTTTGA--CTCTATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTATTTAGAGTGATCTTTTTT | ||
| cjaponica | ------------------------------GAGCTGTTTGCAAGGTACCTAATTGTTTGA--AATGATTCTCAATTGGTCCCCTCCAAGCAGCTC-------------------------------- | ||
| cbrenneri | AAATGAAAAAAAATAAAATTCAATGCCGTGGAGCTGCTTGCAAGGTACCTAATTGTTTGAA-ATTCATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTGTTT-----GATTGTTTGTTT | ||
| cremanei | ------------AAAGTACTCAATGTCGAAGAGCTGCTTGCAAGGTACCTAATTGTTTGCACAT---TTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGT--------------TTT | ||
| ***** ********************** ********************** ***** | |||
| celegans | ((((((...(((((((((((...((.(((.(((((...((........)).)))))))).))...)))))))))))...)))))). | 1.000 -31.70 | |
| cbriggsae | ((((.((((((((..(((((.((((((((((((((...((.(((.(((((...(( ......)).)))))))).))...))))))))))).))))))))..))).......))))).)))) | 0.870 -36.11 | |
| cjaponica | ((((((((((...((.(((.(((((...(( (....))).)))))))).))...)))))))))) | 1.000 -23.90 | |
| cbrenneri | (((..((....(((.((((.((((((.(((((((((((((...((.(((.(((((...((( .....))).)))))))).))...))))))))))))).)))))).)))) .))).))..))) | 1.000 -41.90 | |
| cremanei | ((((((..(((((.((((((((((((((...((.(((.(((((......... ....)))))))).))...))))))))))).))))))))..))) ))) | 1.000 -30.82 |
| celegans | chromosome:I:7887372:7887457:1 | intergenic ## {SimpF: WRM0616dH11 1 fosmid,WRM0641bH03 1 fosmid,WRM061aH05 1 fosmid,WRM0631aF11 1 fosmid,WRM0640dB09 1 fosmid} ## {MIR: cel-mir-245} |
| cbriggsae | chromosome:chrI:6757226:6757345:-1 | Same_strand|Intronic_coding|NM_001087019 ## Opposite_strand|Intronic_coding|NM_020433 ## {MIR: cbr-mir-245} |
| cjaponica | chromosome:chrUn:65682801:65682926:-1 | intergenic |
| cbrenneri | chromosome:chrUn:15027901:15028021:1 | intergenic |
| cremanei | chromosome:chrUn:67773124:67773221:1 | intergenic |
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